miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 821 0.66 0.780148
Target:  5'- aGCCGUccgcGCGCGCGGgcccgGGcUCGacgaaggcGGCGGg -3'
miRNA:   3'- gCGGUA----CGCGCGCCa----CU-AGU--------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 821 0.66 0.780148
Target:  5'- aGCCGUccgcGCGCGCGGgcccgGGcUCGacgaaggcGGCGGg -3'
miRNA:   3'- gCGGUA----CGCGCGCCa----CU-AGU--------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 3137 0.68 0.692632
Target:  5'- gCGuCCA-GCGCGCGGUcGAUgCAAGUGa- -3'
miRNA:   3'- -GC-GGUaCGCGCGCCA-CUA-GUUCGCca -5'
25504 5' -57.9 NC_005337.1 + 4388 0.67 0.732426
Target:  5'- cCGCCAUGUGCaGCGGcGAgaugccguaUCGAG-GGUu -3'
miRNA:   3'- -GCGGUACGCG-CGCCaCU---------AGUUCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 6759 0.68 0.692632
Target:  5'- uCGCCAUGUagugcaGCGCGGUGuUCccGcCGGUg -3'
miRNA:   3'- -GCGGUACG------CGCGCCACuAGuuC-GCCA- -5'
25504 5' -57.9 NC_005337.1 + 11388 0.67 0.769894
Target:  5'- aCGCCgaagucguucagcGUGCGCGCGGccGA-CAcggacAGCGGg -3'
miRNA:   3'- -GCGG-------------UACGCGCGCCa-CUaGU-----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 11909 0.67 0.770832
Target:  5'- aCGCaCAUGCGCGUGGc-GUCcgauGCGGc -3'
miRNA:   3'- -GCG-GUACGCGCGCCacUAGuu--CGCCa -5'
25504 5' -57.9 NC_005337.1 + 12178 0.74 0.344316
Target:  5'- gCGCCGUGCGCGaCGaGcUGGUCGAGCa-- -3'
miRNA:   3'- -GCGGUACGCGC-GC-C-ACUAGUUCGcca -5'
25504 5' -57.9 NC_005337.1 + 13068 0.68 0.662227
Target:  5'- uCGCUGcUGCGCGCGG-GcgCGgaAGCGGc -3'
miRNA:   3'- -GCGGU-ACGCGCGCCaCuaGU--UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 14112 0.7 0.550492
Target:  5'- uGaCUAUGCGgGCGGUGGcCAcGCGGa -3'
miRNA:   3'- gC-GGUACGCgCGCCACUaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 18545 0.68 0.682536
Target:  5'- gCGCCAUGCGUGCGac-GUCGAagauGUGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCcacUAGUU----CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 23087 0.74 0.335934
Target:  5'- uGCCcggcaucGUGCGCGCGGUGGUCA-GCa-- -3'
miRNA:   3'- gCGG-------UACGCGCGCCACUAGUuCGcca -5'
25504 5' -57.9 NC_005337.1 + 25060 0.71 0.511057
Target:  5'- gCGCCGUGCGgGCGGcGuucGUCAAGCu-- -3'
miRNA:   3'- -GCGGUACGCgCGCCaC---UAGUUCGcca -5'
25504 5' -57.9 NC_005337.1 + 29724 0.71 0.520813
Target:  5'- gCGCaCGcGCGCGCGGUGuugcGGCGGa -3'
miRNA:   3'- -GCG-GUaCGCGCGCCACuaguUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 33089 0.66 0.816002
Target:  5'- uGcCCGUGauCGCGGcGAUCAcGCGGa -3'
miRNA:   3'- gC-GGUACgcGCGCCaCUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 33269 0.72 0.454286
Target:  5'- aGCUcuucccGCGCGUGGaGAUCGAGUGGUg -3'
miRNA:   3'- gCGGua----CGCGCGCCaCUAGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 34003 0.72 0.472846
Target:  5'- cCGCCucuugcGCGCGCGGUaggugcucccGGUCAuGGCGGg -3'
miRNA:   3'- -GCGGua----CGCGCGCCA----------CUAGU-UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 36511 0.7 0.59081
Target:  5'- uCGCgCA-GCGCGCGcGUGAUCucGGgGGUc -3'
miRNA:   3'- -GCG-GUaCGCGCGC-CACUAGu-UCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 37220 0.67 0.761393
Target:  5'- gCGCCGcgcGUGCGUGGcGAUgAGGUGGc -3'
miRNA:   3'- -GCGGUa--CGCGCGCCaCUAgUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 40014 0.73 0.392637
Target:  5'- gGCCAUcCGCGCGGUGGagaugCuAGCGGg -3'
miRNA:   3'- gCGGUAcGCGCGCCACUa----GuUCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.