miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 132719 0.94 0.016229
Target:  5'- gCGCCAUGCGCGCGGU-AUCAAGCGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCCAcUAGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 132101 0.66 0.789332
Target:  5'- gCGCCGUGCGCGuCGGcGccgUgcGCGGc -3'
miRNA:   3'- -GCGGUACGCGC-GCCaCua-GuuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 131344 0.67 0.751839
Target:  5'- gCGCCGUGCGCGuCGGcacUCcGGCGa- -3'
miRNA:   3'- -GCGGUACGCGC-GCCacuAGuUCGCca -5'
25504 5' -57.9 NC_005337.1 + 130817 0.68 0.682536
Target:  5'- aCGaCCcaGUGC-CGCcGUGAUCAGGCGGc -3'
miRNA:   3'- -GC-GG--UACGcGCGcCACUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 130176 0.76 0.280147
Target:  5'- gGCCGUGCGCGCGGag--CAcGCGGa -3'
miRNA:   3'- gCGGUACGCGCGCCacuaGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 129704 0.66 0.780148
Target:  5'- uCGCCGcGCcCGCGGcagcaGAUCAuGCGGg -3'
miRNA:   3'- -GCGGUaCGcGCGCCa----CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 128496 0.66 0.789332
Target:  5'- gGgCGUGCGuCGCGuacGUGGUCGcGCGGc -3'
miRNA:   3'- gCgGUACGC-GCGC---CACUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 128485 0.67 0.751839
Target:  5'- uCGuCCcUGCGgGCGGUcGG-CGAGUGGUg -3'
miRNA:   3'- -GC-GGuACGCgCGCCA-CUaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 128308 0.66 0.789332
Target:  5'- gCGCCGUcugcucGCGCGCGGcg--CGAGCGcGa -3'
miRNA:   3'- -GCGGUA------CGCGCGCCacuaGUUCGC-Ca -5'
25504 5' -57.9 NC_005337.1 + 127972 0.67 0.732426
Target:  5'- gCGCCAUGCGCGaGGUGcgCu-GCa-- -3'
miRNA:   3'- -GCGGUACGCGCgCCACuaGuuCGcca -5'
25504 5' -57.9 NC_005337.1 + 126212 0.66 0.816002
Target:  5'- aCGCCAcGCGCGaguGcGUGAUgGAGCuGGc -3'
miRNA:   3'- -GCGGUaCGCGCg--C-CACUAgUUCG-CCa -5'
25504 5' -57.9 NC_005337.1 + 126128 0.68 0.668333
Target:  5'- aCGCCGUGCGCGCGGccaugcccGGCGu- -3'
miRNA:   3'- -GCGGUACGCGCGCCacuagu--UCGCca -5'
25504 5' -57.9 NC_005337.1 + 124782 0.66 0.807267
Target:  5'- gGCCAucgagcucUGCGCGCaGaUGggCcGGCGGUg -3'
miRNA:   3'- gCGGU--------ACGCGCGcC-ACuaGuUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 123700 0.68 0.682536
Target:  5'- aCGCCGUGCG-GCGGcUGggCAcgcccguGCGGa -3'
miRNA:   3'- -GCGGUACGCgCGCC-ACuaGUu------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 123615 0.67 0.761393
Target:  5'- cCGCCGgccgGCGCGCGGUccauagacGAacUCAaccAGUGGc -3'
miRNA:   3'- -GCGGUa---CGCGCGCCA--------CU--AGU---UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 121695 0.66 0.798375
Target:  5'- gCGCCAacgugaacGCGCGCGGgGA---GGCGGa -3'
miRNA:   3'- -GCGGUa-------CGCGCGCCaCUaguUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 120517 0.66 0.789332
Target:  5'- uCGCCGcguucggGCGCGCGGaGAUCAcGCu-- -3'
miRNA:   3'- -GCGGUa------CGCGCGCCaCUAGUuCGcca -5'
25504 5' -57.9 NC_005337.1 + 120465 0.67 0.74218
Target:  5'- gCGCuCGaGCGCGCGcugGAUCGcGCGGa -3'
miRNA:   3'- -GCG-GUaCGCGCGCca-CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 119777 0.66 0.807267
Target:  5'- aCG-CAUGUGgcCGCGcGUGGUCGGuGCGGUg -3'
miRNA:   3'- -GCgGUACGC--GCGC-CACUAGUU-CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 117081 0.66 0.80195
Target:  5'- aCGCCAUguggcuaccGCGCGCccugcuggcgcugucGGUGAUau-GCGGa -3'
miRNA:   3'- -GCGGUA---------CGCGCG---------------CCACUAguuCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.