Results 1 - 20 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 18545 | 0.68 | 0.682536 |
Target: 5'- gCGCCAUGCGUGCGac-GUCGAagauGUGGUc -3' miRNA: 3'- -GCGGUACGCGCGCcacUAGUU----CGCCA- -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 100221 | 0.7 | 0.570564 |
Target: 5'- gGCCGgcgccGCGUGCGcGUGAUC--GCGGUc -3' miRNA: 3'- gCGGUa----CGCGCGC-CACUAGuuCGCCA- -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 110368 | 0.7 | 0.580669 |
Target: 5'- gCGCgCggGCGCGCGGcagcGA-CAGGCGGa -3' miRNA: 3'- -GCG-GuaCGCGCGCCa---CUaGUUCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 100685 | 0.7 | 0.59081 |
Target: 5'- gCGCCGcGCGCGCGGccGAcgCGAcGCGGc -3' miRNA: 3'- -GCGGUaCGCGCGCCa-CUa-GUU-CGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 80143 | 0.69 | 0.600981 |
Target: 5'- aGCCAUGCGCGCGGc------GCGGc -3' miRNA: 3'- gCGGUACGCGCGCCacuaguuCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 42863 | 0.68 | 0.662227 |
Target: 5'- aCGCC-UGCGUGacgaaGGUGcUgGAGCGGg -3' miRNA: 3'- -GCGGuACGCGCg----CCACuAgUUCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 13068 | 0.68 | 0.662227 |
Target: 5'- uCGCUGcUGCGCGCGG-GcgCGgaAGCGGc -3' miRNA: 3'- -GCGGU-ACGCGCGCCaCuaGU--UCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 126128 | 0.68 | 0.668333 |
Target: 5'- aCGCCGUGCGCGCGGccaugcccGGCGu- -3' miRNA: 3'- -GCGGUACGCGCGCCacuagu--UCGCca -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 70156 | 0.68 | 0.672398 |
Target: 5'- aCGCCAUGCGC-CGcGUGAgcCAGGCcGUc -3' miRNA: 3'- -GCGGUACGCGcGC-CACUa-GUUCGcCA- -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 14112 | 0.7 | 0.550492 |
Target: 5'- uGaCUAUGCGgGCGGUGGcCAcGCGGa -3' miRNA: 3'- gC-GGUACGCgCGCCACUaGUuCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 29724 | 0.71 | 0.520813 |
Target: 5'- gCGCaCGcGCGCGCGGUGuugcGGCGGa -3' miRNA: 3'- -GCG-GUaCGCGCGCCACuaguUCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 50405 | 0.71 | 0.501378 |
Target: 5'- gCGCC--GCGCGuCGGUGAcgGAGCGGc -3' miRNA: 3'- -GCGGuaCGCGC-GCCACUagUUCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 130176 | 0.76 | 0.280147 |
Target: 5'- gGCCGUGCGCGCGGag--CAcGCGGa -3' miRNA: 3'- gCGGUACGCGCGCCacuaGUuCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 42620 | 0.75 | 0.29354 |
Target: 5'- cCGCCAUGUGCggcaccGCGGUGGUCGA-CGGc -3' miRNA: 3'- -GCGGUACGCG------CGCCACUAGUUcGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 90698 | 0.75 | 0.312404 |
Target: 5'- gGCCAUcagcaccuccuucaGCGCGCGGUcggGGUCGcAGCGGUc -3' miRNA: 3'- gCGGUA--------------CGCGCGCCA---CUAGU-UCGCCA- -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 23087 | 0.74 | 0.335934 |
Target: 5'- uGCCcggcaucGUGCGCGCGGUGGUCA-GCa-- -3' miRNA: 3'- gCGG-------UACGCGCGCCACUAGUuCGcca -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 74216 | 0.74 | 0.352065 |
Target: 5'- cCGCCGUGCuuGCgGCGGaUGAUCGggagGGCGGg -3' miRNA: 3'- -GCGGUACG--CG-CGCC-ACUAGU----UCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 40014 | 0.73 | 0.392637 |
Target: 5'- gGCCAUcCGCGCGGUGGagaugCuAGCGGg -3' miRNA: 3'- gCGGUAcGCGCGCCACUa----GuUCGCCa -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 97059 | 0.72 | 0.436128 |
Target: 5'- uCGCCAcgcacgcgcgGCGCGCGGUGGUCu-GCGu- -3' miRNA: 3'- -GCGGUa---------CGCGCGCCACUAGuuCGCca -5' |
|||||||
25504 | 5' | -57.9 | NC_005337.1 | + | 109496 | 0.72 | 0.472846 |
Target: 5'- aGCCAcGCGUacGUGGUGAUCAGGaaGGUg -3' miRNA: 3'- gCGGUaCGCG--CGCCACUAGUUCg-CCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home