miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 132719 0.94 0.016229
Target:  5'- gCGCCAUGCGCGCGGU-AUCAAGCGGUc -3'
miRNA:   3'- -GCGGUACGCGCGCCAcUAGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 120465 0.67 0.74218
Target:  5'- gCGCuCGaGCGCGCGcugGAUCGcGCGGa -3'
miRNA:   3'- -GCG-GUaCGCGCGCca-CUAGUuCGCCa -5'
25504 5' -57.9 NC_005337.1 + 131344 0.67 0.751839
Target:  5'- gCGCCGUGCGCGuCGGcacUCcGGCGa- -3'
miRNA:   3'- -GCGGUACGCGC-GCCacuAGuUCGCca -5'
25504 5' -57.9 NC_005337.1 + 83968 0.66 0.816002
Target:  5'- aCGUCAcgGCGUucacgccgGUGGUGGUCuccauGGCGGa -3'
miRNA:   3'- -GCGGUa-CGCG--------CGCCACUAGu----UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 25060 0.71 0.511057
Target:  5'- gCGCCGUGCGgGCGGcGuucGUCAAGCu-- -3'
miRNA:   3'- -GCGGUACGCgCGCCaC---UAGUUCGcca -5'
25504 5' -57.9 NC_005337.1 + 66627 0.71 0.511057
Target:  5'- aCGCCuuucggGCGgGCGGUGG--GAGUGGUg -3'
miRNA:   3'- -GCGGua----CGCgCGCCACUagUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 36511 0.7 0.59081
Target:  5'- uCGCgCA-GCGCGCGcGUGAUCucGGgGGUc -3'
miRNA:   3'- -GCG-GUaCGCGCGC-CACUAGu-UCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 88250 0.68 0.662227
Target:  5'- aCGUCGUGCGUGcCGGcGcgCcGGCGGg -3'
miRNA:   3'- -GCGGUACGCGC-GCCaCuaGuUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 100540 0.68 0.702679
Target:  5'- gCGCCAUGCGCcgGCGGU--UCAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCAcuAGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 77413 0.67 0.74218
Target:  5'- uCGCCAUGCGCugGCGGUG--CAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCACuaGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 76808 0.67 0.732426
Target:  5'- uGagGUGCGCGCGcuugaUGcgCAGGCGGUg -3'
miRNA:   3'- gCggUACGCGCGCc----ACuaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 123700 0.68 0.682536
Target:  5'- aCGCCGUGCG-GCGGcUGggCAcgcccguGCGGa -3'
miRNA:   3'- -GCGGUACGCgCGCC-ACuaGUu------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 12178 0.74 0.344316
Target:  5'- gCGCCGUGCGCGaCGaGcUGGUCGAGCa-- -3'
miRNA:   3'- -GCGGUACGCGC-GC-C-ACUAGUUCGcca -5'
25504 5' -57.9 NC_005337.1 + 127972 0.67 0.732426
Target:  5'- gCGCCAUGCGCGaGGUGcgCu-GCa-- -3'
miRNA:   3'- -GCGGUACGCGCgCCACuaGuuCGcca -5'
25504 5' -57.9 NC_005337.1 + 33269 0.72 0.454286
Target:  5'- aGCUcuucccGCGCGUGGaGAUCGAGUGGUg -3'
miRNA:   3'- gCGGua----CGCGCGCCaCUAGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 130817 0.68 0.682536
Target:  5'- aCGaCCcaGUGC-CGCcGUGAUCAGGCGGc -3'
miRNA:   3'- -GC-GG--UACGcGCGcCACUAGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 4388 0.67 0.732426
Target:  5'- cCGCCAUGUGCaGCGGcGAgaugccguaUCGAG-GGUu -3'
miRNA:   3'- -GCGGUACGCG-CGCCaCU---------AGUUCgCCA- -5'
25504 5' -57.9 NC_005337.1 + 128485 0.67 0.751839
Target:  5'- uCGuCCcUGCGgGCGGUcGG-CGAGUGGUg -3'
miRNA:   3'- -GC-GGuACGCgCGCCA-CUaGUUCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 34003 0.72 0.472846
Target:  5'- cCGCCucuugcGCGCGCGGUaggugcucccGGUCAuGGCGGg -3'
miRNA:   3'- -GCGGua----CGCGCGCCA----------CUAGU-UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 80270 0.7 0.580669
Target:  5'- uGCgCGUGCGCgacGCGGUGAUCcGGCu-- -3'
miRNA:   3'- gCG-GUACGCG---CGCCACUAGuUCGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.