miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 95302 0.66 0.709823
Target:  5'- cCGgUGACGCacgcgcacucGGGCGcCGAUcgGUGCGCGu -3'
miRNA:   3'- -GCgACUGCG----------CCCGUcGCUG--UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 43831 0.66 0.709823
Target:  5'- aCGCUG-CaGCGGGcCGGCGGCGcgGUGgAg -3'
miRNA:   3'- -GCGACuG-CGCCC-GUCGCUGUa-CGCgU- -5'
25505 3' -59.8 NC_005337.1 + 14925 0.66 0.709823
Target:  5'- uGCUGcCGCuGGGgAGCcaGGCcuUGCGCAg -3'
miRNA:   3'- gCGACuGCG-CCCgUCG--CUGu-ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 122299 0.66 0.699923
Target:  5'- gCGCUGAacaccuguccccCGCuGGaC-GCGAUAUGCGCGu -3'
miRNA:   3'- -GCGACU------------GCGcCC-GuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3263 0.66 0.699923
Target:  5'- uCGUUGcgguGCGCGGcggccacguGCAGCGGCGUcgugucguaGCGCGc -3'
miRNA:   3'- -GCGAC----UGCGCC---------CGUCGCUGUA---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 71291 0.66 0.699923
Target:  5'- gCGCUGgugcgcuuccgcACGCacuucucgucGGCGGCGACccGCGCGg -3'
miRNA:   3'- -GCGAC------------UGCGc---------CCGUCGCUGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 121458 0.66 0.693956
Target:  5'- uGCUgGACGCGGGCGcggaucucaacagccGgGACAucUGCGgGu -3'
miRNA:   3'- gCGA-CUGCGCCCGU---------------CgCUGU--ACGCgU- -5'
25505 3' -59.8 NC_005337.1 + 1282 0.66 0.696942
Target:  5'- cCGCgGAgGCGGGuCGGCGGgcagguuguccaucCGgcgGCGCAg -3'
miRNA:   3'- -GCGaCUgCGCCC-GUCGCU--------------GUa--CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 20483 0.67 0.659852
Target:  5'- gCGCUGACG-GGGUugAGCGuuuuCAgaUGCGUg -3'
miRNA:   3'- -GCGACUGCgCCCG--UCGCu---GU--ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 31628 0.67 0.653798
Target:  5'- uGCaUGGCGCGGGCgAagauccggagcuugaGCGACAcGgGCAu -3'
miRNA:   3'- gCG-ACUGCGCCCG-U---------------CGCUGUaCgCGU- -5'
25505 3' -59.8 NC_005337.1 + 128702 0.67 0.649759
Target:  5'- gCGCUGGCGaCGcGGCuGGCGcGCGUGUaccGCGa -3'
miRNA:   3'- -GCGACUGC-GC-CCG-UCGC-UGUACG---CGU- -5'
25505 3' -59.8 NC_005337.1 + 110332 0.67 0.649759
Target:  5'- gGCccGGC-CGGGCGGCGuCGcGCGCGc -3'
miRNA:   3'- gCGa-CUGcGCCCGUCGCuGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 74568 0.67 0.649759
Target:  5'- uGCUGGcCGCGcGGCAcGCGGac-GCGCu -3'
miRNA:   3'- gCGACU-GCGC-CCGU-CGCUguaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 118473 0.67 0.639652
Target:  5'- gGgaGACGCuGGGUgacAGCGACA-GCGaCAg -3'
miRNA:   3'- gCgaCUGCG-CCCG---UCGCUGUaCGC-GU- -5'
25505 3' -59.8 NC_005337.1 + 6025 0.67 0.639652
Target:  5'- gGCgGGCGCcaGCAGgGcCGUGCGCAg -3'
miRNA:   3'- gCGaCUGCGccCGUCgCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 60931 0.67 0.62954
Target:  5'- aCGC-GACGCGccacugccGCGcCGGCAUGCGCAu -3'
miRNA:   3'- -GCGaCUGCGCc-------CGUcGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 50388 0.67 0.62954
Target:  5'- gCGcCUGGCGCGGG-GGCG-CGccGCGCGu -3'
miRNA:   3'- -GC-GACUGCGCCCgUCGCuGUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 40790 0.67 0.669923
Target:  5'- aGCUGGagguccaCGGGaccaugGGCGACGUGUGCGa -3'
miRNA:   3'- gCGACUgc-----GCCCg-----UCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130586 0.67 0.669923
Target:  5'- uGCUGcACGCGuGCAugGGCGUGCGUAc -3'
miRNA:   3'- gCGAC-UGCGCcCGUcgCUGUACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.