miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 17190 0.66 0.699923
Target:  5'- aGCagGGCGCGcGGUAGCcACAUG-GCGu -3'
miRNA:   3'- gCGa-CUGCGC-CCGUCGcUGUACgCGU- -5'
25505 3' -59.8 NC_005337.1 + 124565 0.66 0.699923
Target:  5'- cCGCUG-CGCGaGGCcGCGucCAaGCGCu -3'
miRNA:   3'- -GCGACuGCGC-CCGuCGCu-GUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 68303 0.66 0.719659
Target:  5'- gGCgugGACGCGcGuGCccgaggagGGCGGCAcGCGCGu -3'
miRNA:   3'- gCGa--CUGCGC-C-CG--------UCGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 133147 0.66 0.725526
Target:  5'- aGCUGgucgcgcGCGUGcugcggcugcucccGGCGGCGGCGcUGCGCc -3'
miRNA:   3'- gCGAC-------UGCGC--------------CCGUCGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 80046 0.66 0.729422
Target:  5'- aCGCUGGCGC-GGCGGaCGcuguCAUccGCGCc -3'
miRNA:   3'- -GCGACUGCGcCCGUC-GCu---GUA--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 728 0.66 0.729422
Target:  5'- cCGCgggGuACGCGGGCGagagcGCGGCGccCGCGg -3'
miRNA:   3'- -GCGa--C-UGCGCCCGU-----CGCUGUacGCGU- -5'
25505 3' -59.8 NC_005337.1 + 28497 0.66 0.719659
Target:  5'- gCGC-GGCGCGcGGUcgcGCGGCAcUGCGUg -3'
miRNA:   3'- -GCGaCUGCGC-CCGu--CGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 14860 0.66 0.675952
Target:  5'- uGCUGGCGCgacGGGCGagacuuccgacGCGACuccaugcuguugGCGCGg -3'
miRNA:   3'- gCGACUGCG---CCCGU-----------CGCUGua----------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 2776 0.66 0.718679
Target:  5'- gGCUGuccacgaGCGCGGaccGguGCcGCAUGUGCAc -3'
miRNA:   3'- gCGAC-------UGCGCC---CguCGcUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 95302 0.66 0.709823
Target:  5'- cCGgUGACGCacgcgcacucGGGCGcCGAUcgGUGCGCGu -3'
miRNA:   3'- -GCgACUGCG----------CCCGUcGCUG--UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 122799 0.66 0.709823
Target:  5'- uGCUGcGCGCGGccaucgaccGCAGCG---UGCGCGu -3'
miRNA:   3'- gCGAC-UGCGCC---------CGUCGCuguACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 131004 0.66 0.70389
Target:  5'- cCGCUGcACGUGGccGCcGCGcaccgcaacgacaagGCGUGCGCGc -3'
miRNA:   3'- -GCGAC-UGCGCC--CGuCGC---------------UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 84588 0.66 0.69893
Target:  5'- gCGCUGGUGUGGGUgaccacgAGCGACGccgugGUGCu -3'
miRNA:   3'- -GCGACUGCGCCCG-------UCGCUGUa----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 124623 0.66 0.729422
Target:  5'- aGCUcacGCGCGGGCuGCucaGCAUcGCGCu -3'
miRNA:   3'- gCGAc--UGCGCCCGuCGc--UGUA-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 36104 0.66 0.688969
Target:  5'- aCGCUGgacuucaucaaguGCGCaGGCAcccugucgugcGCGGCGUGCGgGu -3'
miRNA:   3'- -GCGAC-------------UGCGcCCGU-----------CGCUGUACGCgU- -5'
25505 3' -59.8 NC_005337.1 + 59076 0.66 0.679964
Target:  5'- gGCUGGCGCuGGucucGCGGCccgcgGACGcGCGCGa -3'
miRNA:   3'- gCGACUGCG-CC----CGUCG-----CUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 73341 0.66 0.709823
Target:  5'- uGCcGGCGC-GGCAGUGGCGcGuCGCGu -3'
miRNA:   3'- gCGaCUGCGcCCGUCGCUGUaC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 94037 0.66 0.709823
Target:  5'- gCGC-GGCGCGGcGCGGCcGACGacuucuccGCGCu -3'
miRNA:   3'- -GCGaCUGCGCC-CGUCG-CUGUa-------CGCGu -5'
25505 3' -59.8 NC_005337.1 + 69057 0.66 0.689967
Target:  5'- gCGgUGGCcaGCGuGGcCAGCGGCggGUGCAc -3'
miRNA:   3'- -GCgACUG--CGC-CC-GUCGCUGuaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.