Results 21 - 40 of 179 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 1041 | 0.71 | 0.436187 |
Target: 5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3' miRNA: 3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 99291 | 0.71 | 0.436187 |
Target: 5'- uGcCUGGCGCGGcGCGGCGuuccGCA-GCGCc -3' miRNA: 3'- gC-GACUGCGCC-CGUCGC----UGUaCGCGu -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 125115 | 0.73 | 0.322927 |
Target: 5'- aCGCUGACGaCGaGGCuagcgaccgccaAGCGGCGaGCGCGc -3' miRNA: 3'- -GCGACUGC-GC-CCG------------UCGCUGUaCGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 83958 | 0.74 | 0.288155 |
Target: 5'- gGCgguccGCGCaGGGCAGCGGCG-GCGCGg -3' miRNA: 3'- gCGac---UGCG-CCCGUCGCUGUaCGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 13078 | 0.74 | 0.281564 |
Target: 5'- gCGCgGGCGCGGaaGCGGCGACGccaaucGCGCGg -3' miRNA: 3'- -GCGaCUGCGCC--CGUCGCUGUa-----CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 99406 | 0.74 | 0.281564 |
Target: 5'- uGCUGcgcacCGCGGGCGGCGG-GUGCGUg -3' miRNA: 3'- gCGACu----GCGCCCGUCGCUgUACGCGu -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 30256 | 0.74 | 0.281564 |
Target: 5'- gCGCaGGCGCGGGCAgGCGGucCAcgGCGCGc -3' miRNA: 3'- -GCGaCUGCGCCCGU-CGCU--GUa-CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 109179 | 0.74 | 0.275093 |
Target: 5'- cCGCgccGCGCGGGCGGagcuCGGCGUcGCGCAg -3' miRNA: 3'- -GCGac-UGCGCCCGUC----GCUGUA-CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 7048 | 0.74 | 0.275093 |
Target: 5'- aCGUcGGgGCGGGCGGCGGgGuUGCGCGc -3' miRNA: 3'- -GCGaCUgCGCCCGUCGCUgU-ACGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 66074 | 0.78 | 0.153223 |
Target: 5'- uCGCgGACGCGGccGCGGCGGCGgagGCGCu -3' miRNA: 3'- -GCGaCUGCGCC--CGUCGCUGUa--CGCGu -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 64010 | 0.73 | 0.330246 |
Target: 5'- -cCUGGCGuCGGGCAGCGAgucCAacGCGCAg -3' miRNA: 3'- gcGACUGC-GCCCGUCGCU---GUa-CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 850 | 0.73 | 0.337687 |
Target: 5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3' miRNA: 3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 60202 | 0.71 | 0.401521 |
Target: 5'- uGC-GGCGCGGGgGGgGACGgcuuggGCGCGg -3' miRNA: 3'- gCGaCUGCGCCCgUCgCUGUa-----CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 3006 | 0.71 | 0.393132 |
Target: 5'- gGCgGACGgGcuccGGCAGCG-CGUGCGCGc -3' miRNA: 3'- gCGaCUGCgC----CCGUCGCuGUACGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 44775 | 0.72 | 0.384857 |
Target: 5'- gGCUGAagGUGGuuuuGC-GCGACGUGCGCAa -3' miRNA: 3'- gCGACUg-CGCC----CGuCGCUGUACGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 131718 | 0.72 | 0.384857 |
Target: 5'- cCGCaaGAuCGCGGGCAGCuccGCGUGcCGCAg -3' miRNA: 3'- -GCGa-CU-GCGCCCGUCGc--UGUAC-GCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 95453 | 0.72 | 0.376699 |
Target: 5'- aCGCguccaGCGCGGcGUAGCGcccCGUGCGCAg -3' miRNA: 3'- -GCGac---UGCGCC-CGUCGCu--GUACGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 93720 | 0.72 | 0.376699 |
Target: 5'- gGCUcGACGCGGccucCAGCGACccgccgGCGCAa -3' miRNA: 3'- gCGA-CUGCGCCc---GUCGCUGua----CGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 64154 | 0.72 | 0.368658 |
Target: 5'- -cCUGACGgaGGGCGGCGAgGagaUGCGCGu -3' miRNA: 3'- gcGACUGCg-CCCGUCGCUgU---ACGCGU- -5' |
|||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 9419 | 0.73 | 0.337687 |
Target: 5'- uGUUGAgcuCGCGGGUGGCGGCcaucUGCGCc -3' miRNA: 3'- gCGACU---GCGCCCGUCGCUGu---ACGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home