miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 8077 0.69 0.51996
Target:  5'- cCGCgagGACGCGcgacGGCAcaguGCGAC-UGCGCu -3'
miRNA:   3'- -GCGa--CUGCGC----CCGU----CGCUGuACGCGu -5'
25505 3' -59.8 NC_005337.1 + 8137 0.68 0.608319
Target:  5'- uCGggGACGcCGGGCAuggccgcGCGcacgGCGUGCGCGu -3'
miRNA:   3'- -GCgaCUGC-GCCCGU-------CGC----UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 8273 0.68 0.55921
Target:  5'- gGUUGaACGC-GGCcGCGACGUGCaGCGg -3'
miRNA:   3'- gCGAC-UGCGcCCGuCGCUGUACG-CGU- -5'
25505 3' -59.8 NC_005337.1 + 9419 0.73 0.337687
Target:  5'- uGUUGAgcuCGCGGGUGGCGGCcaucUGCGCc -3'
miRNA:   3'- gCGACU---GCGCCCGUCGCUGu---ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 10435 0.67 0.669923
Target:  5'- aCGCcuGCGCGGcGguGCGcgcguCGUGCGCc -3'
miRNA:   3'- -GCGacUGCGCC-CguCGCu----GUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 10873 0.66 0.729422
Target:  5'- uCGCcGA-GCGGGCgAGCaccACGUGUGCGg -3'
miRNA:   3'- -GCGaCUgCGCCCG-UCGc--UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 11707 0.68 0.56916
Target:  5'- cCGUUGcCGUGGGC-GUGAuCAUgGCGCAg -3'
miRNA:   3'- -GCGACuGCGCCCGuCGCU-GUA-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 13078 0.74 0.281564
Target:  5'- gCGCgGGCGCGGaaGCGGCGACGccaaucGCGCGg -3'
miRNA:   3'- -GCGaCUGCGCC--CGUCGCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 14437 0.67 0.659852
Target:  5'- cCGCUGGCGcCGGGUAcCGAgCGccGCGCu -3'
miRNA:   3'- -GCGACUGC-GCCCGUcGCU-GUa-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 14621 0.66 0.727476
Target:  5'- cCGgUGACuGCGGGCAG-GGCugguaugugucGCGCAc -3'
miRNA:   3'- -GCgACUG-CGCCCGUCgCUGua---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 14860 0.66 0.675952
Target:  5'- uGCUGGCGCgacGGGCGagacuuccgacGCGACuccaugcuguugGCGCGg -3'
miRNA:   3'- gCGACUGCG---CCCGU-----------CGCUGua----------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 14925 0.66 0.709823
Target:  5'- uGCUGcCGCuGGGgAGCcaGGCcuUGCGCAg -3'
miRNA:   3'- gCGACuGCG-CCCgUCG--CUGu-ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 17190 0.66 0.699923
Target:  5'- aGCagGGCGCGcGGUAGCcACAUG-GCGu -3'
miRNA:   3'- gCGa-CUGCGC-CCGUCGcUGUACgCGU- -5'
25505 3' -59.8 NC_005337.1 + 20483 0.67 0.659852
Target:  5'- gCGCUGACG-GGGUugAGCGuuuuCAgaUGCGUg -3'
miRNA:   3'- -GCGACUGCgCCCG--UCGCu---GU--ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 22656 0.69 0.500738
Target:  5'- gCGCgGACGCGcGGCuGCGGgA-GCGCu -3'
miRNA:   3'- -GCGaCUGCGC-CCGuCGCUgUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 25054 0.69 0.51996
Target:  5'- uGCUGcgcgccgUGCGGGCGGCGuucguCAagcUGCGCGa -3'
miRNA:   3'- gCGACu------GCGCCCGUCGCu----GU---ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 25280 0.68 0.603275
Target:  5'- gCGCUGGaguucgcgcgcacgGCGGGCGGgccgcgcguCGACcgGCGCGu -3'
miRNA:   3'- -GCGACUg-------------CGCCCGUC---------GCUGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 25511 0.68 0.599244
Target:  5'- uCGUugaUGACGCGcuccaGGCAGCGGCccacGCGCc -3'
miRNA:   3'- -GCG---ACUGCGC-----CCGUCGCUGua--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 28245 0.66 0.689967
Target:  5'- aCGCcGuCGCGcGGCAccacGCGcACGUGCGUg -3'
miRNA:   3'- -GCGaCuGCGC-CCGU----CGC-UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 28497 0.66 0.719659
Target:  5'- gCGC-GGCGCGcGGUcgcGCGGCAcUGCGUg -3'
miRNA:   3'- -GCGaCUGCGC-CCGu--CGCUGU-ACGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.