miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 728 0.66 0.729422
Target:  5'- cCGCgggGuACGCGGGCGagagcGCGGCGccCGCGg -3'
miRNA:   3'- -GCGa--C-UGCGCCCGU-----CGCUGUacGCGU- -5'
25505 3' -59.8 NC_005337.1 + 728 0.66 0.729422
Target:  5'- cCGCgggGuACGCGGGCGagagcGCGGCGccCGCGg -3'
miRNA:   3'- -GCGa--C-UGCGCCCGU-----CGCUGUacGCGU- -5'
25505 3' -59.8 NC_005337.1 + 850 0.73 0.337687
Target:  5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3'
miRNA:   3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 850 0.73 0.337687
Target:  5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3'
miRNA:   3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 956 0.69 0.549309
Target:  5'- uGCUGGCGgcggcgGGGCuggAGCGGCGgggcugGCGCGg -3'
miRNA:   3'- gCGACUGCg-----CCCG---UCGCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 956 0.69 0.549309
Target:  5'- uGCUGGCGgcggcgGGGCuggAGCGGCGgggcugGCGCGg -3'
miRNA:   3'- gCGACUGCg-----CCCG---UCGCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 1282 0.66 0.696942
Target:  5'- cCGCgGAgGCGGGuCGGCGGgcagguuguccaucCGgcgGCGCAg -3'
miRNA:   3'- -GCGaCUgCGCCC-GUCGCU--------------GUa--CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 1427 0.67 0.62954
Target:  5'- uGCUGACGUGGuGUaugccGGCGAuCGUGCa-- -3'
miRNA:   3'- gCGACUGCGCC-CG-----UCGCU-GUACGcgu -5'
25505 3' -59.8 NC_005337.1 + 2202 0.72 0.360735
Target:  5'- gGCgGACGCGGGCGcggcccgggccGCGAgCGcGCGCAg -3'
miRNA:   3'- gCGaCUGCGCCCGU-----------CGCU-GUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 2776 0.66 0.718679
Target:  5'- gGCUGuccacgaGCGCGGaccGguGCcGCAUGUGCAc -3'
miRNA:   3'- gCGAC-------UGCGCC---CguCGcUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3006 0.71 0.393132
Target:  5'- gGCgGACGgGcuccGGCAGCG-CGUGCGCGc -3'
miRNA:   3'- gCGaCUGCgC----CCGUCGCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3263 0.66 0.699923
Target:  5'- uCGUUGcgguGCGCGGcggccacguGCAGCGGCGUcgugucguaGCGCGc -3'
miRNA:   3'- -GCGAC----UGCGCC---------CGUCGCUGUA---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 4576 0.81 0.096429
Target:  5'- uGCUGcCGCGGGCgcGGCGAC-UGCGCGu -3'
miRNA:   3'- gCGACuGCGCCCG--UCGCUGuACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 5455 0.66 0.678962
Target:  5'- aGUUGACGUaccacacGGuGguGCGGCAccgcucggUGCGCAc -3'
miRNA:   3'- gCGACUGCG-------CC-CguCGCUGU--------ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 6025 0.67 0.639652
Target:  5'- gGCgGGCGCcaGCAGgGcCGUGCGCAg -3'
miRNA:   3'- gCGaCUGCGccCGUCgCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 6103 0.68 0.55921
Target:  5'- aGgUGuacguCGCGGccacguGCAGCGGCGUGCGUc -3'
miRNA:   3'- gCgACu----GCGCC------CGUCGCUGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 6258 0.67 0.659852
Target:  5'- uCGCUGACGCuGGCGcCGGCGUccaggagcaGcCGCAg -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUGUA---------C-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 7048 0.74 0.275093
Target:  5'- aCGUcGGgGCGGGCGGCGGgGuUGCGCGc -3'
miRNA:   3'- -GCGaCUgCGCCCGUCGCUgU-ACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.