Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25505 | 3' | -59.8 | NC_005337.1 | + | 132323 | 1.08 | 0.001317 |
Target: 5'- uCGCUGACGCGGGCAGCGACAUGCGCAc -3' miRNA: 3'- -GCGACUGCGCCCGUCGCUGUACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 68947 | 0.86 | 0.043478 |
Target: 5'- gGCcgacGACGCGGGaCAGCGGCAUGCGCGc -3' miRNA: 3'- gCGa---CUGCGCCC-GUCGCUGUACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 4576 | 0.81 | 0.096429 |
Target: 5'- uGCUGcCGCGGGCgcGGCGAC-UGCGCGu -3' miRNA: 3'- gCGACuGCGCCCG--UCGCUGuACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 110370 | 0.79 | 0.128208 |
Target: 5'- gCGCgGGCGCGcGGCAGCGACAgGCGgAg -3' miRNA: 3'- -GCGaCUGCGC-CCGUCGCUGUaCGCgU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 66074 | 0.78 | 0.153223 |
Target: 5'- uCGCgGACGCGGccGCGGCGGCGgagGCGCu -3' miRNA: 3'- -GCGaCUGCGCC--CGUCGCUGUa--CGCGu -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 127037 | 0.77 | 0.169435 |
Target: 5'- uGCUGGCgGCGGGC-GCGGagGUGCGCAc -3' miRNA: 3'- gCGACUG-CGCCCGuCGCUg-UACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 126932 | 0.76 | 0.203502 |
Target: 5'- uGCUGGagGCGGGCGcggacgugaacgcgcGCGACGUGUGCGg -3' miRNA: 3'- gCGACUg-CGCCCGU---------------CGCUGUACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 63732 | 0.76 | 0.221596 |
Target: 5'- uCGUUGGCguaguccGCGGGCAGCGAgugGCGCAc -3' miRNA: 3'- -GCGACUG-------CGCCCGUCGCUguaCGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 7048 | 0.74 | 0.275093 |
Target: 5'- aCGUcGGgGCGGGCGGCGGgGuUGCGCGc -3' miRNA: 3'- -GCGaCUgCGCCCGUCGCUgU-ACGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 109179 | 0.74 | 0.275093 |
Target: 5'- cCGCgccGCGCGGGCGGagcuCGGCGUcGCGCAg -3' miRNA: 3'- -GCGac-UGCGCCCGUC----GCUGUA-CGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 13078 | 0.74 | 0.281564 |
Target: 5'- gCGCgGGCGCGGaaGCGGCGACGccaaucGCGCGg -3' miRNA: 3'- -GCGaCUGCGCC--CGUCGCUGUa-----CGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 99406 | 0.74 | 0.281564 |
Target: 5'- uGCUGcgcacCGCGGGCGGCGG-GUGCGUg -3' miRNA: 3'- gCGACu----GCGCCCGUCGCUgUACGCGu -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 30256 | 0.74 | 0.281564 |
Target: 5'- gCGCaGGCGCGGGCAgGCGGucCAcgGCGCGc -3' miRNA: 3'- -GCGaCUGCGCCCGU-CGCU--GUa-CGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 83958 | 0.74 | 0.288155 |
Target: 5'- gGCgguccGCGCaGGGCAGCGGCG-GCGCGg -3' miRNA: 3'- gCGac---UGCG-CCCGUCGCUGUaCGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 66321 | 0.74 | 0.294867 |
Target: 5'- cCGCgGuCGCGGGCuGGCGACAcGUGCu -3' miRNA: 3'- -GCGaCuGCGCCCG-UCGCUGUaCGCGu -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 125115 | 0.73 | 0.322927 |
Target: 5'- aCGCUGACGaCGaGGCuagcgaccgccaAGCGGCGaGCGCGc -3' miRNA: 3'- -GCGACUGC-GC-CCG------------UCGCUGUaCGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 64010 | 0.73 | 0.330246 |
Target: 5'- -cCUGGCGuCGGGCAGCGAgucCAacGCGCAg -3' miRNA: 3'- gcGACUGC-GCCCGUCGCU---GUa-CGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 850 | 0.73 | 0.337687 |
Target: 5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3' miRNA: 3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 850 | 0.73 | 0.337687 |
Target: 5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3' miRNA: 3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5' |
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25505 | 3' | -59.8 | NC_005337.1 | + | 9419 | 0.73 | 0.337687 |
Target: 5'- uGUUGAgcuCGCGGGUGGCGGCcaucUGCGCc -3' miRNA: 3'- gCGACU---GCGCCCGUCGCUGu---ACGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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