miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 117567 0.72 0.35995
Target:  5'- -aCUGACGCGucacccGGCAGCGGaggccgcCGUGCGCGa -3'
miRNA:   3'- gcGACUGCGC------CCGUCGCU-------GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 2202 0.72 0.360735
Target:  5'- gGCgGACGCGGGCGcggcccgggccGCGAgCGcGCGCAg -3'
miRNA:   3'- gCGaCUGCGCCCGU-----------CGCU-GUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 64154 0.72 0.368658
Target:  5'- -cCUGACGgaGGGCGGCGAgGagaUGCGCGu -3'
miRNA:   3'- gcGACUGCg-CCCGUCGCUgU---ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 93720 0.72 0.376699
Target:  5'- gGCUcGACGCGGccucCAGCGACccgccgGCGCAa -3'
miRNA:   3'- gCGA-CUGCGCCc---GUCGCUGua----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 95453 0.72 0.376699
Target:  5'- aCGCguccaGCGCGGcGUAGCGcccCGUGCGCAg -3'
miRNA:   3'- -GCGac---UGCGCC-CGUCGCu--GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 131718 0.72 0.384857
Target:  5'- cCGCaaGAuCGCGGGCAGCuccGCGUGcCGCAg -3'
miRNA:   3'- -GCGa-CU-GCGCCCGUCGc--UGUAC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 44775 0.72 0.384857
Target:  5'- gGCUGAagGUGGuuuuGC-GCGACGUGCGCAa -3'
miRNA:   3'- gCGACUg-CGCC----CGuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 76818 0.71 0.393132
Target:  5'- gCGCuUGAUGCGcaGGCGGUGG-AUGCGCAg -3'
miRNA:   3'- -GCG-ACUGCGC--CCGUCGCUgUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3006 0.71 0.393132
Target:  5'- gGCgGACGgGcuccGGCAGCG-CGUGCGCGc -3'
miRNA:   3'- gCGaCUGCgC----CCGUCGCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 28984 0.71 0.401521
Target:  5'- aGC-GACuGCGGGCAGCGGCGgcCGCc -3'
miRNA:   3'- gCGaCUG-CGCCCGUCGCUGUacGCGu -5'
25505 3' -59.8 NC_005337.1 + 60202 0.71 0.401521
Target:  5'- uGC-GGCGCGGGgGGgGACGgcuuggGCGCGg -3'
miRNA:   3'- gCGaCUGCGCCCgUCgCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 122600 0.71 0.410023
Target:  5'- -cCUGgaccACGCGGGCGGCGGCGUGUu-- -3'
miRNA:   3'- gcGAC----UGCGCCCGUCGCUGUACGcgu -5'
25505 3' -59.8 NC_005337.1 + 104303 0.71 0.410023
Target:  5'- cCGCgagGGCGC-GGCGGCGcucuGCGUGCGUc -3'
miRNA:   3'- -GCGa--CUGCGcCCGUCGC----UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 99291 0.71 0.436187
Target:  5'- uGcCUGGCGCGGcGCGGCGuuccGCA-GCGCc -3'
miRNA:   3'- gC-GACUGCGCC-CGUCGC----UGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 39110 0.7 0.44512
Target:  5'- gCGCgGAagcuCGCGGGCAGCG---UGCGCu -3'
miRNA:   3'- -GCGaCU----GCGCCCGUCGCuguACGCGu -5'
25505 3' -59.8 NC_005337.1 + 97112 0.7 0.44512
Target:  5'- cCGCaGugGCGcucGGCGGUGGCGgagcUGCGCGu -3'
miRNA:   3'- -GCGaCugCGC---CCGUCGCUGU----ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127936 0.7 0.448722
Target:  5'- aCGCgGACGCGGuGCGcgaguGCGAggcggagauccgcgcCAUGCGCGa -3'
miRNA:   3'- -GCGaCUGCGCC-CGU-----CGCU---------------GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 77776 0.7 0.454155
Target:  5'- uCGCgGACGUGGGCcacgaacuuGGCGAUAUccugGCGCc -3'
miRNA:   3'- -GCGaCUGCGCCCG---------UCGCUGUA----CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.