miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 122799 0.66 0.709823
Target:  5'- uGCUGcGCGCGGccaucgaccGCAGCG---UGCGCGu -3'
miRNA:   3'- gCGAC-UGCGCC---------CGUCGCuguACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 58902 0.66 0.709823
Target:  5'- uCGUgGugGCGcGGCAG-GACuccgGCGCGg -3'
miRNA:   3'- -GCGaCugCGC-CCGUCgCUGua--CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 70057 0.66 0.709823
Target:  5'- gCGCUGcccguCGCGGaCcGCGAacuCGUGCGCGa -3'
miRNA:   3'- -GCGACu----GCGCCcGuCGCU---GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 73341 0.66 0.709823
Target:  5'- uGCcGGCGC-GGCAGUGGCGcGuCGCGu -3'
miRNA:   3'- gCGaCUGCGcCCGUCGCUGUaC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 94037 0.66 0.709823
Target:  5'- gCGC-GGCGCGGcGCGGCcGACGacuucuccGCGCu -3'
miRNA:   3'- -GCGaCUGCGCC-CGUCG-CUGUa-------CGCGu -5'
25505 3' -59.8 NC_005337.1 + 131004 0.66 0.70389
Target:  5'- cCGCUGcACGUGGccGCcGCGcaccgcaacgacaagGCGUGCGCGc -3'
miRNA:   3'- -GCGAC-UGCGCC--CGuCGC---------------UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 38344 0.66 0.699923
Target:  5'- gGCUgGACGUGGaGC-GCGAgGcGCGCGc -3'
miRNA:   3'- gCGA-CUGCGCC-CGuCGCUgUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 71291 0.66 0.699923
Target:  5'- gCGCUGgugcgcuuccgcACGCacuucucgucGGCGGCGACccGCGCGg -3'
miRNA:   3'- -GCGAC------------UGCGc---------CCGUCGCUGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 124565 0.66 0.699923
Target:  5'- cCGCUG-CGCGaGGCcGCGucCAaGCGCu -3'
miRNA:   3'- -GCGACuGCGC-CCGuCGCu-GUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 122299 0.66 0.699923
Target:  5'- gCGCUGAacaccuguccccCGCuGGaC-GCGAUAUGCGCGu -3'
miRNA:   3'- -GCGACU------------GCGcCC-GuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 17190 0.66 0.699923
Target:  5'- aGCagGGCGCGcGGUAGCcACAUG-GCGu -3'
miRNA:   3'- gCGa-CUGCGC-CCGUCGcUGUACgCGU- -5'
25505 3' -59.8 NC_005337.1 + 3263 0.66 0.699923
Target:  5'- uCGUUGcgguGCGCGGcggccacguGCAGCGGCGUcgugucguaGCGCGc -3'
miRNA:   3'- -GCGAC----UGCGCC---------CGUCGCUGUA---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 84588 0.66 0.69893
Target:  5'- gCGCUGGUGUGGGUgaccacgAGCGACGccgugGUGCu -3'
miRNA:   3'- -GCGACUGCGCCCG-------UCGCUGUa----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 1282 0.66 0.696942
Target:  5'- cCGCgGAgGCGGGuCGGCGGgcagguuguccaucCGgcgGCGCAg -3'
miRNA:   3'- -GCGaCUgCGCCC-GUCGCU--------------GUa--CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 121458 0.66 0.693956
Target:  5'- uGCUgGACGCGGGCGcggaucucaacagccGgGACAucUGCGgGu -3'
miRNA:   3'- gCGA-CUGCGCCCGU---------------CgCUGU--ACGCgU- -5'
25505 3' -59.8 NC_005337.1 + 28245 0.66 0.689967
Target:  5'- aCGCcGuCGCGcGGCAccacGCGcACGUGCGUg -3'
miRNA:   3'- -GCGaCuGCGC-CCGU----CGC-UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 69057 0.66 0.689967
Target:  5'- gCGgUGGCcaGCGuGGcCAGCGGCggGUGCAc -3'
miRNA:   3'- -GCgACUG--CGC-CC-GUCGCUGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 34839 0.66 0.689967
Target:  5'- cCGCaUGAUG-GGGCAuauauGCGGCG-GCGCGc -3'
miRNA:   3'- -GCG-ACUGCgCCCGU-----CGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 36104 0.66 0.688969
Target:  5'- aCGCUGgacuucaucaaguGCGCaGGCAcccugucgugcGCGGCGUGCGgGu -3'
miRNA:   3'- -GCGAC-------------UGCGcCCGU-----------CGCUGUACGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.