miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 107941 0.66 0.683971
Target:  5'- cCGCUGAUGCGGcuGCuGCugGACAaccggaccgucauggUGCGCu -3'
miRNA:   3'- -GCGACUGCGCC--CGuCG--CUGU---------------ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 67977 0.66 0.679964
Target:  5'- gCGCUcACGCgguccaGGGuCGGCG-CGUGCGCc -3'
miRNA:   3'- -GCGAcUGCG------CCC-GUCGCuGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 36449 0.66 0.679964
Target:  5'- aGCUG-CGCGGGCGGaCGcACGgucuucaccaccUGcCGCAc -3'
miRNA:   3'- gCGACuGCGCCCGUC-GC-UGU------------AC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 39661 0.66 0.679964
Target:  5'- cCGCguggGGCGCGuGGCcccgGGCacguACGUGCGCu -3'
miRNA:   3'- -GCGa---CUGCGC-CCG----UCGc---UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 59076 0.66 0.679964
Target:  5'- gGCUGGCGCuGGucucGCGGCccgcgGACGcGCGCGa -3'
miRNA:   3'- gCGACUGCG-CC----CGUCG-----CUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 114976 0.66 0.679964
Target:  5'- cCGCcuACGUGGGCGGCGAUAUaguccuaCGCu -3'
miRNA:   3'- -GCGacUGCGCCCGUCGCUGUAc------GCGu -5'
25505 3' -59.8 NC_005337.1 + 50105 0.66 0.678962
Target:  5'- uCGCUGAUGgaacaCGGGCgcucgcuGGCGcGCAucUGCGCGg -3'
miRNA:   3'- -GCGACUGC-----GCCCG-------UCGC-UGU--ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 5455 0.66 0.678962
Target:  5'- aGUUGACGUaccacacGGuGguGCGGCAccgcucggUGCGCAc -3'
miRNA:   3'- gCGACUGCG-------CC-CguCGCUGU--------ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 14860 0.66 0.675952
Target:  5'- uGCUGGCGCgacGGGCGagacuuccgacGCGACuccaugcuguugGCGCGg -3'
miRNA:   3'- gCGACUGCG---CCCGU-----------CGCUGua----------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 110015 0.67 0.669923
Target:  5'- aGCUGACGUGGaaGGCGAacuCGUGCu-- -3'
miRNA:   3'- gCGACUGCGCCcgUCGCU---GUACGcgu -5'
25505 3' -59.8 NC_005337.1 + 95029 0.67 0.669923
Target:  5'- gGCggGACgGCGGGCAG-GAaCGccUGCGCGu -3'
miRNA:   3'- gCGa-CUG-CGCCCGUCgCU-GU--ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 10435 0.67 0.669923
Target:  5'- aCGCcuGCGCGGcGguGCGcgcguCGUGCGCc -3'
miRNA:   3'- -GCGacUGCGCC-CguCGCu----GUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 57132 0.67 0.669923
Target:  5'- aGCUGaACGCGcugcucGGCGGCGGCAcGCcCGu -3'
miRNA:   3'- gCGAC-UGCGC------CCGUCGCUGUaCGcGU- -5'
25505 3' -59.8 NC_005337.1 + 78320 0.67 0.669923
Target:  5'- uCGCUGuccACGuuGGCGGCGACcacGCGUc -3'
miRNA:   3'- -GCGAC---UGCgcCCGUCGCUGua-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 130586 0.67 0.669923
Target:  5'- uGCUGcACGCGuGCAugGGCGUGCGUAc -3'
miRNA:   3'- gCGAC-UGCGCcCGUcgCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 40790 0.67 0.669923
Target:  5'- aGCUGGagguccaCGGGaccaugGGCGACGUGUGCGa -3'
miRNA:   3'- gCGACUgc-----GCCCg-----UCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 117505 0.67 0.669923
Target:  5'- gGC-GACGCGGuGCA-CGACAUcagccgGCGCGc -3'
miRNA:   3'- gCGaCUGCGCC-CGUcGCUGUA------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127262 0.67 0.659852
Target:  5'- uGCUGGagGCGGGC-GCGgACGUccGCGCc -3'
miRNA:   3'- gCGACUg-CGCCCGuCGC-UGUA--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 14437 0.67 0.659852
Target:  5'- cCGCUGGCGcCGGGUAcCGAgCGccGCGCu -3'
miRNA:   3'- -GCGACUGC-GCCCGUcGCU-GUa-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 20483 0.67 0.659852
Target:  5'- gCGCUGACG-GGGUugAGCGuuuuCAgaUGCGUg -3'
miRNA:   3'- -GCGACUGCgCCCG--UCGCu---GU--ACGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.