miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 64154 0.72 0.368658
Target:  5'- -cCUGACGgaGGGCGGCGAgGagaUGCGCGu -3'
miRNA:   3'- gcGACUGCg-CCCGUCGCUgU---ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 93720 0.72 0.376699
Target:  5'- gGCUcGACGCGGccucCAGCGACccgccgGCGCAa -3'
miRNA:   3'- gCGA-CUGCGCCc---GUCGCUGua----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 95453 0.72 0.376699
Target:  5'- aCGCguccaGCGCGGcGUAGCGcccCGUGCGCAg -3'
miRNA:   3'- -GCGac---UGCGCC-CGUCGCu--GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 131718 0.72 0.384857
Target:  5'- cCGCaaGAuCGCGGGCAGCuccGCGUGcCGCAg -3'
miRNA:   3'- -GCGa-CU-GCGCCCGUCGc--UGUAC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 44775 0.72 0.384857
Target:  5'- gGCUGAagGUGGuuuuGC-GCGACGUGCGCAa -3'
miRNA:   3'- gCGACUg-CGCC----CGuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3006 0.71 0.393132
Target:  5'- gGCgGACGgGcuccGGCAGCG-CGUGCGCGc -3'
miRNA:   3'- gCGaCUGCgC----CCGUCGCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 60202 0.71 0.401521
Target:  5'- uGC-GGCGCGGGgGGgGACGgcuuggGCGCGg -3'
miRNA:   3'- gCGaCUGCGCCCgUCgCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 99291 0.71 0.436187
Target:  5'- uGcCUGGCGCGGcGCGGCGuuccGCA-GCGCc -3'
miRNA:   3'- gC-GACUGCGCC-CGUCGC----UGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 9419 0.73 0.337687
Target:  5'- uGUUGAgcuCGCGGGUGGCGGCcaucUGCGCc -3'
miRNA:   3'- gCGACU---GCGCCCGUCGCUGu---ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 850 0.73 0.337687
Target:  5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3'
miRNA:   3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 64010 0.73 0.330246
Target:  5'- -cCUGGCGuCGGGCAGCGAgucCAacGCGCAg -3'
miRNA:   3'- gcGACUGC-GCCCGUCGCU---GUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 66074 0.78 0.153223
Target:  5'- uCGCgGACGCGGccGCGGCGGCGgagGCGCu -3'
miRNA:   3'- -GCGaCUGCGCC--CGUCGCUGUa--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 7048 0.74 0.275093
Target:  5'- aCGUcGGgGCGGGCGGCGGgGuUGCGCGc -3'
miRNA:   3'- -GCGaCUgCGCCCGUCGCUgU-ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 109179 0.74 0.275093
Target:  5'- cCGCgccGCGCGGGCGGagcuCGGCGUcGCGCAg -3'
miRNA:   3'- -GCGac-UGCGCCCGUC----GCUGUA-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 30256 0.74 0.281564
Target:  5'- gCGCaGGCGCGGGCAgGCGGucCAcgGCGCGc -3'
miRNA:   3'- -GCGaCUGCGCCCGU-CGCU--GUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 99406 0.74 0.281564
Target:  5'- uGCUGcgcacCGCGGGCGGCGG-GUGCGUg -3'
miRNA:   3'- gCGACu----GCGCCCGUCGCUgUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 13078 0.74 0.281564
Target:  5'- gCGCgGGCGCGGaaGCGGCGACGccaaucGCGCGg -3'
miRNA:   3'- -GCGaCUGCGCC--CGUCGCUGUa-----CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 83958 0.74 0.288155
Target:  5'- gGCgguccGCGCaGGGCAGCGGCG-GCGCGg -3'
miRNA:   3'- gCGac---UGCG-CCCGUCGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 125115 0.73 0.322927
Target:  5'- aCGCUGACGaCGaGGCuagcgaccgccaAGCGGCGaGCGCGc -3'
miRNA:   3'- -GCGACUGC-GC-CCG------------UCGCUGUaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.