miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 132323 1.08 0.001317
Target:  5'- uCGCUGACGCGGGCAGCGACAUGCGCAc -3'
miRNA:   3'- -GCGACUGCGCCCGUCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130246 0.7 0.463288
Target:  5'- cCGCUGcACGCGuaccugcacaccGGUGGCcccaagGACGUGCGCAu -3'
miRNA:   3'- -GCGAC-UGCGC------------CCGUCG------CUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 118932 0.7 0.472517
Target:  5'- aGCgucGCGCGGGCgcAGCGuGCGUcGCGCGa -3'
miRNA:   3'- gCGac-UGCGCCCG--UCGC-UGUA-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 124623 0.66 0.729422
Target:  5'- aGCUcacGCGCGGGCuGCucaGCAUcGCGCu -3'
miRNA:   3'- gCGAc--UGCGCCCGuCGc--UGUA-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 126932 0.76 0.203502
Target:  5'- uGCUGGagGCGGGCGcggacgugaacgcgcGCGACGUGUGCGg -3'
miRNA:   3'- gCGACUg-CGCCCGU---------------CGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 63732 0.76 0.221596
Target:  5'- uCGUUGGCguaguccGCGGGCAGCGAgugGCGCAc -3'
miRNA:   3'- -GCGACUG-------CGCCCGUCGCUguaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 850 0.73 0.337687
Target:  5'- aCGaaGGCgGCGGGCAGCG-CggGCGCGg -3'
miRNA:   3'- -GCgaCUG-CGCCCGUCGCuGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 117567 0.72 0.35995
Target:  5'- -aCUGACGCGucacccGGCAGCGGaggccgcCGUGCGCGa -3'
miRNA:   3'- gcGACUGCGC------CCGUCGCU-------GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 28984 0.71 0.401521
Target:  5'- aGC-GACuGCGGGCAGCGGCGgcCGCc -3'
miRNA:   3'- gCGaCUG-CGCCCGUCGCUGUacGCGu -5'
25505 3' -59.8 NC_005337.1 + 77413 0.7 0.463288
Target:  5'- uCGCcauGCGCuGGCGGUG-CAUGCGCAc -3'
miRNA:   3'- -GCGac-UGCGcCCGUCGCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 104303 0.71 0.410023
Target:  5'- cCGCgagGGCGC-GGCGGCGcucuGCGUGCGUc -3'
miRNA:   3'- -GCGa--CUGCGcCCGUCGC----UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 76818 0.71 0.393132
Target:  5'- gCGCuUGAUGCGcaGGCGGUGG-AUGCGCAg -3'
miRNA:   3'- -GCG-ACUGCGC--CCGUCGCUgUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 68947 0.86 0.043478
Target:  5'- gGCcgacGACGCGGGaCAGCGGCAUGCGCGc -3'
miRNA:   3'- gCGa---CUGCGCCC-GUCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 1041 0.71 0.436187
Target:  5'- gCGCggGAgGCGGGCGGCGggagGCcgGCGgGg -3'
miRNA:   3'- -GCGa-CUgCGCCCGUCGC----UGuaCGCgU- -5'
25505 3' -59.8 NC_005337.1 + 4576 0.81 0.096429
Target:  5'- uGCUGcCGCGGGCgcGGCGAC-UGCGCGu -3'
miRNA:   3'- gCGACuGCGCCCG--UCGCUGuACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 2202 0.72 0.360735
Target:  5'- gGCgGACGCGGGCGcggcccgggccGCGAgCGcGCGCAg -3'
miRNA:   3'- gCGaCUGCGCCCGU-----------CGCU-GUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127936 0.7 0.448722
Target:  5'- aCGCgGACGCGGuGCGcgaguGCGAggcggagauccgcgcCAUGCGCGa -3'
miRNA:   3'- -GCGaCUGCGCC-CGU-----CGCU---------------GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 86159 0.7 0.47159
Target:  5'- aGC-GugGCGGgggagggguagcuGCAGCG-CAUGCGCGc -3'
miRNA:   3'- gCGaCugCGCC-------------CGUCGCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127037 0.77 0.169435
Target:  5'- uGCUGGCgGCGGGC-GCGGagGUGCGCAc -3'
miRNA:   3'- gCGACUG-CGCCCGuCGCUg-UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 66321 0.74 0.294867
Target:  5'- cCGCgGuCGCGGGCuGGCGACAcGUGCu -3'
miRNA:   3'- -GCGaCuGCGCCCG-UCGCUGUaCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.