miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 71291 0.66 0.699923
Target:  5'- gCGCUGgugcgcuuccgcACGCacuucucgucGGCGGCGACccGCGCGg -3'
miRNA:   3'- -GCGAC------------UGCGc---------CCGUCGCUGuaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 2776 0.66 0.718679
Target:  5'- gGCUGuccacgaGCGCGGaccGguGCcGCAUGUGCAc -3'
miRNA:   3'- gCGAC-------UGCGCC---CguCGcUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132293 0.66 0.719659
Target:  5'- aGCUGACGCccgacccGGCgugcacGGCGGCGgaggggGCGCu -3'
miRNA:   3'- gCGACUGCGc------CCG------UCGCUGUa-----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 28245 0.66 0.689967
Target:  5'- aCGCcGuCGCGcGGCAccacGCGcACGUGCGUg -3'
miRNA:   3'- -GCGaCuGCGC-CCGU----CGC-UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 14925 0.66 0.709823
Target:  5'- uGCUGcCGCuGGGgAGCcaGGCcuUGCGCAg -3'
miRNA:   3'- gCGACuGCG-CCCgUCG--CUGu-ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 121458 0.66 0.693956
Target:  5'- uGCUgGACGCGGGCGcggaucucaacagccGgGACAucUGCGgGu -3'
miRNA:   3'- gCGA-CUGCGCCCGU---------------CgCUGU--ACGCgU- -5'
25505 3' -59.8 NC_005337.1 + 38344 0.66 0.699923
Target:  5'- gGCUgGACGUGGaGC-GCGAgGcGCGCGc -3'
miRNA:   3'- gCGA-CUGCGCC-CGuCGCUgUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 50105 0.66 0.678962
Target:  5'- uCGCUGAUGgaacaCGGGCgcucgcuGGCGcGCAucUGCGCGg -3'
miRNA:   3'- -GCGACUGC-----GCCCG-------UCGC-UGU--ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 3263 0.66 0.699923
Target:  5'- uCGUUGcgguGCGCGGcggccacguGCAGCGGCGUcgugucguaGCGCGc -3'
miRNA:   3'- -GCGAC----UGCGCC---------CGUCGCUGUA---------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 95302 0.66 0.709823
Target:  5'- cCGgUGACGCacgcgcacucGGGCGcCGAUcgGUGCGCGu -3'
miRNA:   3'- -GCgACUGCG----------CCCGUcGCUG--UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 124623 0.66 0.729422
Target:  5'- aGCUcacGCGCGGGCuGCucaGCAUcGCGCu -3'
miRNA:   3'- gCGAc--UGCGCCCGuCGc--UGUA-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 43831 0.66 0.709823
Target:  5'- aCGCUG-CaGCGGGcCGGCGGCGcgGUGgAg -3'
miRNA:   3'- -GCGACuG-CGCCC-GUCGCUGUa-CGCgU- -5'
25505 3' -59.8 NC_005337.1 + 36449 0.66 0.679964
Target:  5'- aGCUG-CGCGGGCGGaCGcACGgucuucaccaccUGcCGCAc -3'
miRNA:   3'- gCGACuGCGCCCGUC-GC-UGU------------AC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 5455 0.66 0.678962
Target:  5'- aGUUGACGUaccacacGGuGguGCGGCAccgcucggUGCGCAc -3'
miRNA:   3'- gCGACUGCG-------CC-CguCGCUGU--------ACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 122299 0.66 0.699923
Target:  5'- gCGCUGAacaccuguccccCGCuGGaC-GCGAUAUGCGCGu -3'
miRNA:   3'- -GCGACU------------GCGcCC-GuCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 34839 0.66 0.689967
Target:  5'- cCGCaUGAUG-GGGCAuauauGCGGCG-GCGCGc -3'
miRNA:   3'- -GCG-ACUGCgCCCGU-----CGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 67977 0.66 0.679964
Target:  5'- gCGCUcACGCgguccaGGGuCGGCG-CGUGCGCc -3'
miRNA:   3'- -GCGAcUGCG------CCC-GUCGCuGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 39661 0.66 0.679964
Target:  5'- cCGCguggGGCGCGuGGCcccgGGCacguACGUGCGCu -3'
miRNA:   3'- -GCGa---CUGCGC-CCG----UCGc---UGUACGCGu -5'
25505 3' -59.8 NC_005337.1 + 114976 0.66 0.679964
Target:  5'- cCGCcuACGUGGGCGGCGAUAUaguccuaCGCu -3'
miRNA:   3'- -GCGacUGCGCCCGUCGCUGUAc------GCGu -5'
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.