miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 133716 0.68 0.55921
Target:  5'- cCGCggcGuACGCGcGGCGGUGGCGgagugGCGCc -3'
miRNA:   3'- -GCGa--C-UGCGC-CCGUCGCUGUa----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 133716 0.68 0.55921
Target:  5'- cCGCggcGuACGCGcGGCGGUGGCGgagugGCGCc -3'
miRNA:   3'- -GCGa--C-UGCGC-CCGUCGCUGUa----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 133147 0.66 0.725526
Target:  5'- aGCUGgucgcgcGCGUGcugcggcugcucccGGCGGCGGCGcUGCGCc -3'
miRNA:   3'- gCGAC-------UGCGC--------------CCGUCGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 133147 0.66 0.725526
Target:  5'- aGCUGgucgcgcGCGUGcugcggcugcucccGGCGGCGGCGcUGCGCc -3'
miRNA:   3'- gCGAC-------UGCGC--------------CCGUCGCUGU-ACGCGu -5'
25505 3' -59.8 NC_005337.1 + 132771 0.67 0.619429
Target:  5'- gCGCUGGCGCGcGCcgaGGUGACG-GUGCc -3'
miRNA:   3'- -GCGACUGCGCcCG---UCGCUGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 132323 1.08 0.001317
Target:  5'- uCGCUGACGCGGGCAGCGACAUGCGCAc -3'
miRNA:   3'- -GCGACUGCGCCCGUCGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132293 0.66 0.719659
Target:  5'- aGCUGACGCccgacccGGCgugcacGGCGGCGgaggggGCGCu -3'
miRNA:   3'- gCGACUGCGc------CCG------UCGCUGUa-----CGCGu -5'
25505 3' -59.8 NC_005337.1 + 132187 0.66 0.709823
Target:  5'- gCGCUGGCGCuGGCGuCGA---GCGCGc -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUguaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 132175 0.67 0.619429
Target:  5'- uGcCUGAC-CGGGCucGCGGCGcGCGCc -3'
miRNA:   3'- gC-GACUGcGCCCGu-CGCUGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 131718 0.72 0.384857
Target:  5'- cCGCaaGAuCGCGGGCAGCuccGCGUGcCGCAg -3'
miRNA:   3'- -GCGa-CU-GCGCCCGUCGc--UGUAC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 131004 0.66 0.70389
Target:  5'- cCGCUGcACGUGGccGCcGCGcaccgcaacgacaagGCGUGCGCGc -3'
miRNA:   3'- -GCGAC-UGCGCC--CGuCGC---------------UGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130957 0.67 0.639652
Target:  5'- aCGCcGGCGU-GGCcGUgGACGUGCGCAa -3'
miRNA:   3'- -GCGaCUGCGcCCGuCG-CUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130586 0.67 0.669923
Target:  5'- uGCUGcACGCGuGCAugGGCGUGCGUAc -3'
miRNA:   3'- gCGAC-UGCGCcCGUcgCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130246 0.7 0.463288
Target:  5'- cCGCUGcACGCGuaccugcacaccGGUGGCcccaagGACGUGCGCAu -3'
miRNA:   3'- -GCGAC-UGCGC------------CCGUCG------CUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 130081 0.69 0.513198
Target:  5'- uCGCUGACGCaggccguugaggccgGGGuCAGCGACgcaucacggcucuGUGuCGCGu -3'
miRNA:   3'- -GCGACUGCG---------------CCC-GUCGCUG-------------UAC-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 128702 0.67 0.649759
Target:  5'- gCGCUGGCGaCGcGGCuGGCGcGCGUGUaccGCGa -3'
miRNA:   3'- -GCGACUGC-GC-CCG-UCGC-UGUACG---CGU- -5'
25505 3' -59.8 NC_005337.1 + 127936 0.7 0.448722
Target:  5'- aCGCgGACGCGGuGCGcgaguGCGAggcggagauccgcgcCAUGCGCGa -3'
miRNA:   3'- -GCGaCUGCGCC-CGU-----CGCU---------------GUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127882 0.69 0.539463
Target:  5'- uGgUGGCGCGcGGCGcCGGCGaGCGCGu -3'
miRNA:   3'- gCgACUGCGC-CCGUcGCUGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127373 0.67 0.619429
Target:  5'- gCGCcGGCGCGGacccgcgcGCGcGCGACAUggacggGCGCAc -3'
miRNA:   3'- -GCGaCUGCGCC--------CGU-CGCUGUA------CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 127262 0.67 0.659852
Target:  5'- uGCUGGagGCGGGC-GCGgACGUccGCGCc -3'
miRNA:   3'- gCGACUg-CGCCCGuCGC-UGUA--CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.