miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 3' -59.8 NC_005337.1 + 14437 0.67 0.659852
Target:  5'- cCGCUGGCGcCGGGUAcCGAgCGccGCGCu -3'
miRNA:   3'- -GCGACUGC-GCCCGUcGCU-GUa-CGCGu -5'
25505 3' -59.8 NC_005337.1 + 127262 0.67 0.659852
Target:  5'- uGCUGGagGCGGGC-GCGgACGUccGCGCc -3'
miRNA:   3'- gCGACUg-CGCCCGuCGC-UGUA--CGCGu -5'
25505 3' -59.8 NC_005337.1 + 6258 0.67 0.659852
Target:  5'- uCGCUGACGCuGGCGcCGGCGUccaggagcaGcCGCAg -3'
miRNA:   3'- -GCGACUGCGcCCGUcGCUGUA---------C-GCGU- -5'
25505 3' -59.8 NC_005337.1 + 31628 0.67 0.653798
Target:  5'- uGCaUGGCGCGGGCgAagauccggagcuugaGCGACAcGgGCAu -3'
miRNA:   3'- gCG-ACUGCGCCCG-U---------------CGCUGUaCgCGU- -5'
25505 3' -59.8 NC_005337.1 + 100531 0.67 0.649759
Target:  5'- aGCUGcucugcgccauGCGCcGGCGGUu-CAUGCGCAg -3'
miRNA:   3'- gCGAC-----------UGCGcCCGUCGcuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 39413 0.67 0.649759
Target:  5'- gCGCUGuucgacacGCGCGGGCGcccgcucgggccGCGcucgGUGCGCAc -3'
miRNA:   3'- -GCGAC--------UGCGCCCGU------------CGCug--UACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 35162 0.67 0.649759
Target:  5'- uCGCUGGCGgaGuGGuCGGCGACG-GCGUc -3'
miRNA:   3'- -GCGACUGCg-C-CC-GUCGCUGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 74568 0.67 0.649759
Target:  5'- uGCUGGcCGCGcGGCAcGCGGac-GCGCu -3'
miRNA:   3'- gCGACU-GCGC-CCGU-CGCUguaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 128702 0.67 0.649759
Target:  5'- gCGCUGGCGaCGcGGCuGGCGcGCGUGUaccGCGa -3'
miRNA:   3'- -GCGACUGC-GC-CCG-UCGC-UGUACG---CGU- -5'
25505 3' -59.8 NC_005337.1 + 110332 0.67 0.649759
Target:  5'- gGCccGGC-CGGGCGGCGuCGcGCGCGc -3'
miRNA:   3'- gCGa-CUGcGCCCGUCGCuGUaCGCGU- -5'
25505 3' -59.8 NC_005337.1 + 113153 0.67 0.648749
Target:  5'- uGCUGuuCGCGGuGCgcugcguGGCGGCcgGCGUc -3'
miRNA:   3'- gCGACu-GCGCC-CG-------UCGCUGuaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 118473 0.67 0.639652
Target:  5'- gGgaGACGCuGGGUgacAGCGACA-GCGaCAg -3'
miRNA:   3'- gCgaCUGCG-CCCG---UCGCUGUaCGC-GU- -5'
25505 3' -59.8 NC_005337.1 + 130957 0.67 0.639652
Target:  5'- aCGCcGGCGU-GGCcGUgGACGUGCGCAa -3'
miRNA:   3'- -GCGaCUGCGcCCGuCG-CUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 6025 0.67 0.639652
Target:  5'- gGCgGGCGCcaGCAGgGcCGUGCGCAg -3'
miRNA:   3'- gCGaCUGCGccCGUCgCuGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 108870 0.67 0.639652
Target:  5'- aCGCUcaaGuACGCGgucgucgacGGCGGCGGCAgcgaGCGCGu -3'
miRNA:   3'- -GCGA---C-UGCGC---------CCGUCGCUGUa---CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 50388 0.67 0.62954
Target:  5'- gCGcCUGGCGCGGG-GGCG-CGccGCGCGu -3'
miRNA:   3'- -GC-GACUGCGCCCgUCGCuGUa-CGCGU- -5'
25505 3' -59.8 NC_005337.1 + 82124 0.67 0.62954
Target:  5'- gCGCUGGCGCaugaGCGcGCGACAcGCGUc -3'
miRNA:   3'- -GCGACUGCGcc--CGU-CGCUGUaCGCGu -5'
25505 3' -59.8 NC_005337.1 + 1427 0.67 0.62954
Target:  5'- uGCUGACGUGGuGUaugccGGCGAuCGUGCa-- -3'
miRNA:   3'- gCGACUGCGCC-CG-----UCGCU-GUACGcgu -5'
25505 3' -59.8 NC_005337.1 + 60931 0.67 0.62954
Target:  5'- aCGC-GACGCGccacugccGCGcCGGCAUGCGCAu -3'
miRNA:   3'- -GCGaCUGCGCc-------CGUcGCUGUACGCGU- -5'
25505 3' -59.8 NC_005337.1 + 80616 0.67 0.619429
Target:  5'- cCGCcGACGCGcugcaucGCGGCGAUcacgGCGCAc -3'
miRNA:   3'- -GCGaCUGCGCc------CGUCGCUGua--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.