miRNA display CGI


Results 61 - 80 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 6386 0.66 0.839888
Target:  5'- --cGC-ACGCGCUCgCcgGCGCCGcGCGCc -3'
miRNA:   3'- cgaCGuUGUGCGAG-Ga-CGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 127500 0.66 0.839888
Target:  5'- --cGCGgggaguucgaccGCACGCcCUUGCACCuGUACa -3'
miRNA:   3'- cgaCGU------------UGUGCGaGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 77101 0.66 0.839888
Target:  5'- aGgUGCGGCACauGCUCC-GCAgCAcGCGCc -3'
miRNA:   3'- -CgACGUUGUG--CGAGGaCGUgGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 122726 0.66 0.833138
Target:  5'- uGCUGUcGCACGUgcccgcggacgaCCUGCGgccacccugcgcugcCCGGCGCa -3'
miRNA:   3'- -CGACGuUGUGCGa-----------GGACGU---------------GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 114280 0.66 0.832286
Target:  5'- --cGCAGCACGUgcugcccgaggaccUCCUggaggagcucucgcgGCGCCGGUGCg -3'
miRNA:   3'- cgaCGUUGUGCG--------------AGGA---------------CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 36620 0.66 0.831431
Target:  5'- gGUUGCGGa--GCUuggUgaGCACCAGCACg -3'
miRNA:   3'- -CGACGUUgugCGA---GgaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 91724 0.66 0.831431
Target:  5'- aGCcGCAGC-CGCaCCaGCGCCcgcAGCGCg -3'
miRNA:   3'- -CGaCGUUGuGCGaGGaCGUGG---UCGUG- -5'
25505 5' -56 NC_005337.1 + 69945 0.66 0.831431
Target:  5'- cGCgGCGcCACGCUCC-GCGuggUgGGCACg -3'
miRNA:   3'- -CGaCGUuGUGCGAGGaCGU---GgUCGUG- -5'
25505 5' -56 NC_005337.1 + 15130 0.66 0.831431
Target:  5'- -gUGCuAGCAUGCcCCaGUACCAGCGu -3'
miRNA:   3'- cgACG-UUGUGCGaGGaCGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 95546 0.66 0.831431
Target:  5'- --cGCAguGCGCGgUCUUGUACCcguuggcgAGCACg -3'
miRNA:   3'- cgaCGU--UGUGCgAGGACGUGG--------UCGUG- -5'
25505 5' -56 NC_005337.1 + 56488 0.66 0.831431
Target:  5'- uGCUGCcguACGCGCUCCccaacuccGCggACCccgaGGCGCg -3'
miRNA:   3'- -CGACGu--UGUGCGAGGa-------CG--UGG----UCGUG- -5'
25505 5' -56 NC_005337.1 + 62822 0.66 0.831431
Target:  5'- cCUGCGGCACGUgguacuUCCggaaccacucCACCAGCAg -3'
miRNA:   3'- cGACGUUGUGCG------AGGac--------GUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 75997 0.66 0.831431
Target:  5'- gGCgaagGUGGC-CGC-CgUGCGCCGGUACa -3'
miRNA:   3'- -CGa---CGUUGuGCGaGgACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 124023 0.66 0.831431
Target:  5'- aGCUGCugauguGGCugGCcaCCUGCAaggAGCACa -3'
miRNA:   3'- -CGACG------UUGugCGa-GGACGUgg-UCGUG- -5'
25505 5' -56 NC_005337.1 + 30889 0.67 0.823657
Target:  5'- cGCUGCAG-GCGCUCCaucuccgcguccauCACgAGCACg -3'
miRNA:   3'- -CGACGUUgUGCGAGGac------------GUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 68387 0.67 0.822784
Target:  5'- cGgUGCGACGucCGC-CCUGCGCgcgugcguggUAGCGCg -3'
miRNA:   3'- -CgACGUUGU--GCGaGGACGUG----------GUCGUG- -5'
25505 5' -56 NC_005337.1 + 93720 0.67 0.822784
Target:  5'- gGCU-CGACGCGgcCUCCaGCgacccGCCGGCGCa -3'
miRNA:   3'- -CGAcGUUGUGC--GAGGaCG-----UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 8223 0.67 0.822784
Target:  5'- --gGCAAgGguCGCgUCC-GCACCGGCGCg -3'
miRNA:   3'- cgaCGUUgU--GCG-AGGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 50320 0.67 0.822784
Target:  5'- cGCUGCccuGCGCGgaCC-GC-CCGGUACc -3'
miRNA:   3'- -CGACGu--UGUGCgaGGaCGuGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 99883 0.67 0.822784
Target:  5'- uGgaGCAccgcCACGCUCCUcuggcucgccGCGgCGGCGCu -3'
miRNA:   3'- -CgaCGUu---GUGCGAGGA----------CGUgGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.