miRNA display CGI


Results 41 - 60 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 16003 0.66 0.8522
Target:  5'- aGCUGCGagaccguACGCGCggCCggcagguacacgcGCugCGGCGCc -3'
miRNA:   3'- -CGACGU-------UGUGCGa-GGa------------CGugGUCGUG- -5'
25505 5' -56 NC_005337.1 + 31304 0.66 0.851393
Target:  5'- cGCUGCucgaagcGCAuccccacgaccacggUGUUCucgcaCUGCACCAGCACc -3'
miRNA:   3'- -CGACGu------UGU---------------GCGAG-----GACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 51591 0.66 0.851393
Target:  5'- uGCUGCAGCA-GCUCCaccacaaccaccgcgUGCgucccugcaacuACCAGCuGCu -3'
miRNA:   3'- -CGACGUUGUgCGAGG---------------ACG------------UGGUCG-UG- -5'
25505 5' -56 NC_005337.1 + 99296 0.66 0.848147
Target:  5'- gGC-GCGGCgcgGCGUUCCgcaGCGCCGGguCg -3'
miRNA:   3'- -CGaCGUUG---UGCGAGGa--CGUGGUCguG- -5'
25505 5' -56 NC_005337.1 + 119829 0.66 0.848147
Target:  5'- --gGCAGCgcgGCGCUCgguacccgGCGCCAGCGg -3'
miRNA:   3'- cgaCGUUG---UGCGAGga------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 1180 0.66 0.848147
Target:  5'- cGgaGC-GCACGgauCUCCUGCauccaggcggccACCGGCGCc -3'
miRNA:   3'- -CgaCGuUGUGC---GAGGACG------------UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 41664 0.66 0.848147
Target:  5'- cGCUGaGACGCGCgcgaacgcggUCUGCACgGGCu- -3'
miRNA:   3'- -CGACgUUGUGCGa---------GGACGUGgUCGug -5'
25505 5' -56 NC_005337.1 + 34979 0.66 0.848147
Target:  5'- cGCUGCGGaACGCcgcgCC-GCGCCAGgCAg -3'
miRNA:   3'- -CGACGUUgUGCGa---GGaCGUGGUC-GUg -5'
25505 5' -56 NC_005337.1 + 5869 0.66 0.848147
Target:  5'- gGCUGCGugGCGagagcgGcCGCCAGCAUg -3'
miRNA:   3'- -CGACGUugUGCgagga-C-GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 51208 0.66 0.848147
Target:  5'- aCUGCAGCugGUggaCgUGCAcacgcCCAGCAg -3'
miRNA:   3'- cGACGUUGugCGa--GgACGU-----GGUCGUg -5'
25505 5' -56 NC_005337.1 + 125263 0.66 0.84733
Target:  5'- aCUGCAcguacucAUGCGCUgCaGCcCCGGCACg -3'
miRNA:   3'- cGACGU-------UGUGCGAgGaCGuGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 102203 0.66 0.845691
Target:  5'- cGCUGCGcaucacggaccccgACACGUacgCCcgGCugUGGCGCg -3'
miRNA:   3'- -CGACGU--------------UGUGCGa--GGa-CGugGUCGUG- -5'
25505 5' -56 NC_005337.1 + 96271 0.66 0.845691
Target:  5'- aCUGCAACggguacguggucaaGCGCUUCgacacGUcgGCCAGCGCc -3'
miRNA:   3'- cGACGUUG--------------UGCGAGGa----CG--UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 68375 0.66 0.845691
Target:  5'- aGgaGCAgcGCACGCcgUCCUcggucacggcgaccGCgGCCAGCACc -3'
miRNA:   3'- -CgaCGU--UGUGCG--AGGA--------------CG-UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 127500 0.66 0.839888
Target:  5'- --cGCGgggaguucgaccGCACGCcCUUGCACCuGUACa -3'
miRNA:   3'- cgaCGU------------UGUGCGaGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 6386 0.66 0.839888
Target:  5'- --cGC-ACGCGCUCgCcgGCGCCGcGCGCc -3'
miRNA:   3'- cgaCGuUGUGCGAG-Ga-CGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 129227 0.66 0.839888
Target:  5'- uGCUGUGGCGCGacccCgCUGCAUCuGUACg -3'
miRNA:   3'- -CGACGUUGUGCga--G-GACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 55209 0.66 0.839888
Target:  5'- cCUGCA-CACGaacaUCCUGguCuuCAGCACg -3'
miRNA:   3'- cGACGUuGUGCg---AGGACguG--GUCGUG- -5'
25505 5' -56 NC_005337.1 + 5955 0.66 0.839888
Target:  5'- --aGCAGuCGCGCUC--GCGCCGcGCGCg -3'
miRNA:   3'- cgaCGUU-GUGCGAGgaCGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 107871 0.66 0.839888
Target:  5'- cGCcGCgAGCACGUaCCUGCugCcGCAg -3'
miRNA:   3'- -CGaCG-UUGUGCGaGGACGugGuCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.