miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 131366 0.66 0.864041
Target:  5'- --gGCGACGcCGCUCCUGgACguGguCu -3'
miRNA:   3'- cgaCGUUGU-GCGAGGACgUGguCguG- -5'
25505 5' -56 NC_005337.1 + 92977 0.66 0.864041
Target:  5'- cGCUGgaCAACGCGCUggCCgugaugGCGCU-GCGCg -3'
miRNA:   3'- -CGAC--GUUGUGCGA--GGa-----CGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 118760 0.66 0.864041
Target:  5'- uGCUGCuGCGCGacgUCCuagaUGaCGCCGGCGg -3'
miRNA:   3'- -CGACGuUGUGCg--AGG----AC-GUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 35797 0.66 0.864041
Target:  5'- cGCcGcCGGCGCGCcCCUGC-CUuGCGCa -3'
miRNA:   3'- -CGaC-GUUGUGCGaGGACGuGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 127628 0.66 0.860931
Target:  5'- cGUUGUAcCGCGCggcggucuucaacCCUGCggcguGCCGGCGCc -3'
miRNA:   3'- -CGACGUuGUGCGa------------GGACG-----UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 31232 0.66 0.859362
Target:  5'- cGCUGCAGCagcaucagcaggucGCgGCUCCggcagcggaugcggUGCGCCAGgGa -3'
miRNA:   3'- -CGACGUUG--------------UG-CGAGG--------------ACGUGGUCgUg -5'
25505 5' -56 NC_005337.1 + 133195 0.66 0.8562
Target:  5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3'
miRNA:   3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5'
25505 5' -56 NC_005337.1 + 111612 0.66 0.8562
Target:  5'- --cGCGAaGCGCUCCcGCAgCcGCGCg -3'
miRNA:   3'- cgaCGUUgUGCGAGGaCGUgGuCGUG- -5'
25505 5' -56 NC_005337.1 + 31884 0.66 0.8562
Target:  5'- --gGCAcggucuuCGCGCUCUc-CACCAGCGCg -3'
miRNA:   3'- cgaCGUu------GUGCGAGGacGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 108897 0.66 0.8562
Target:  5'- gGCgGCAGCgaGCGCgugagCaaggGCACCAGCGa -3'
miRNA:   3'- -CGaCGUUG--UGCGa----Gga--CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 112476 0.66 0.8562
Target:  5'- aGCUGCGGCGCGUcgaagGCgGCCcgcAGCACg -3'
miRNA:   3'- -CGACGUUGUGCGagga-CG-UGG---UCGUG- -5'
25505 5' -56 NC_005337.1 + 105219 0.66 0.8562
Target:  5'- cGCUGagcuGCGCGCUCgCggGCGcCCGGCuCa -3'
miRNA:   3'- -CGACgu--UGUGCGAG-Ga-CGU-GGUCGuG- -5'
25505 5' -56 NC_005337.1 + 33391 0.66 0.8562
Target:  5'- cCUGCAccgGC-UGCUCCaUGCGCgucauCGGCACg -3'
miRNA:   3'- cGACGU---UGuGCGAGG-ACGUG-----GUCGUG- -5'
25505 5' -56 NC_005337.1 + 131471 0.66 0.8562
Target:  5'- cCUGCAGCAgCGC-CUagUGCACaugCGGCACc -3'
miRNA:   3'- cGACGUUGU-GCGaGG--ACGUG---GUCGUG- -5'
25505 5' -56 NC_005337.1 + 127989 0.66 0.8562
Target:  5'- cGCUGCAACgccgacacgACGCUgCUGgACguGCu- -3'
miRNA:   3'- -CGACGUUG---------UGCGAgGACgUGguCGug -5'
25505 5' -56 NC_005337.1 + 5566 0.66 0.8562
Target:  5'- --cGguACACGCgcgCCaGCcgcgucGCCAGCGCg -3'
miRNA:   3'- cgaCguUGUGCGa--GGaCG------UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 133195 0.66 0.8562
Target:  5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3'
miRNA:   3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5'
25505 5' -56 NC_005337.1 + 99523 0.66 0.8562
Target:  5'- uCUGCGACgACGCggCCcggUGCGCCGccgacugcucGCGCg -3'
miRNA:   3'- cGACGUUG-UGCGa-GG---ACGUGGU----------CGUG- -5'
25505 5' -56 NC_005337.1 + 100896 0.66 0.8562
Target:  5'- cGCgggGCG--GCGCUCCgacgacuacaugUGCACCAccguGCGCa -3'
miRNA:   3'- -CGa--CGUugUGCGAGG------------ACGUGGU----CGUG- -5'
25505 5' -56 NC_005337.1 + 14643 0.66 0.8562
Target:  5'- aGCgcacCGAgGCGUccUCCgGCAUCAGCGCg -3'
miRNA:   3'- -CGac--GUUgUGCG--AGGaCGUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.