miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 5955 0.66 0.839888
Target:  5'- --aGCAGuCGCGCUC--GCGCCGcGCGCg -3'
miRNA:   3'- cgaCGUU-GUGCGAGgaCGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 6128 0.67 0.822784
Target:  5'- aGCccgGCGACAUGCUCggccagggacaUGCGCaGGCGCa -3'
miRNA:   3'- -CGa--CGUUGUGCGAGg----------ACGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 6386 0.66 0.839888
Target:  5'- --cGC-ACGCGCUCgCcgGCGCCGcGCGCc -3'
miRNA:   3'- cgaCGuUGUGCGAG-Ga-CGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 6448 0.66 0.874647
Target:  5'- uGCgGuCGACgACGCUCCgcacguugacgucaGCGCCGGCGu -3'
miRNA:   3'- -CGaC-GUUG-UGCGAGGa-------------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 6900 0.71 0.592774
Target:  5'- --cGCGcGCGCGCgggUCC-GCGCCGGCGCg -3'
miRNA:   3'- cgaCGU-UGUGCG---AGGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 8075 0.67 0.795786
Target:  5'- cGC-GCGugGCG-UCCguggGCACgAGCACg -3'
miRNA:   3'- -CGaCGUugUGCgAGGa---CGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 8223 0.67 0.822784
Target:  5'- --gGCAAgGguCGCgUCC-GCACCGGCGCg -3'
miRNA:   3'- cgaCGUUgU--GCG-AGGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 8713 0.76 0.325049
Target:  5'- cCUGgcCAGCACGCUUCUGCACaCGcGCACg -3'
miRNA:   3'- cGAC--GUUGUGCGAGGACGUG-GU-CGUG- -5'
25505 5' -56 NC_005337.1 + 9749 0.71 0.603215
Target:  5'- --aGCAGCGCGCgucggCCgGCGCCggguuGGCACc -3'
miRNA:   3'- cgaCGUUGUGCGa----GGaCGUGG-----UCGUG- -5'
25505 5' -56 NC_005337.1 + 10275 0.68 0.753739
Target:  5'- gGCgGCGGCGCGUUCagcauggcgcgcGCAUCGGCGCc -3'
miRNA:   3'- -CGaCGUUGUGCGAGga----------CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 10442 0.72 0.520928
Target:  5'- cGCgGCGguGCGCGCgUCgUGCGCCAGgACc -3'
miRNA:   3'- -CGaCGU--UGUGCG-AGgACGUGGUCgUG- -5'
25505 5' -56 NC_005337.1 + 10645 0.7 0.64512
Target:  5'- cGCUGCAGa--GCUCCacgaGCGUCAGCACc -3'
miRNA:   3'- -CGACGUUgugCGAGGa---CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 11493 0.68 0.737865
Target:  5'- cGCaGCAACGCGUccaugaUCC-GCGgCCAGUACu -3'
miRNA:   3'- -CGaCGUUGUGCG------AGGaCGU-GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 11738 0.82 0.13143
Target:  5'- gGCUGCAGCGCGCgucgCC-GCGCCAGgGCc -3'
miRNA:   3'- -CGACGUUGUGCGa---GGaCGUGGUCgUG- -5'
25505 5' -56 NC_005337.1 + 12664 0.7 0.613677
Target:  5'- cCUGCAGCAUgaGCUCCUccaGCuccuccucCCGGCGCg -3'
miRNA:   3'- cGACGUUGUG--CGAGGA---CGu-------GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 13407 0.69 0.707467
Target:  5'- cGgaGCGAUggagcuuuuuGCGgUCgaGCGCCAGCACc -3'
miRNA:   3'- -CgaCGUUG----------UGCgAGgaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 14643 0.66 0.8562
Target:  5'- aGCgcacCGAgGCGUccUCCgGCAUCAGCGCg -3'
miRNA:   3'- -CGac--GUUgUGCG--AGGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 15130 0.66 0.831431
Target:  5'- -gUGCuAGCAUGCcCCaGUACCAGCGu -3'
miRNA:   3'- cgACG-UUGUGCGaGGaCGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 15215 0.7 0.64512
Target:  5'- gGCUGCGACACaccgcgaggagGUcgaaccggUCCUggcgGCGCCGGCGCc -3'
miRNA:   3'- -CGACGUUGUG-----------CG--------AGGA----CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 16003 0.66 0.8522
Target:  5'- aGCUGCGagaccguACGCGCggCCggcagguacacgcGCugCGGCGCc -3'
miRNA:   3'- -CGACGU-------UGUGCGa-GGa------------CGugGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.