miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 524 0.72 0.520928
Target:  5'- cGCgGCGcAgGCGCUCCaGCuGCCGGCGCc -3'
miRNA:   3'- -CGaCGU-UgUGCGAGGaCG-UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 524 0.72 0.520928
Target:  5'- cGCgGCGcAgGCGCUCCaGCuGCCGGCGCc -3'
miRNA:   3'- -CGaCGU-UgUGCGAGGaCG-UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 650 0.68 0.767394
Target:  5'- cCUGCAcgGCgACGgugacCUCCUGCAgCAGCAg -3'
miRNA:   3'- cGACGU--UG-UGC-----GAGGACGUgGUCGUg -5'
25505 5' -56 NC_005337.1 + 650 0.68 0.767394
Target:  5'- cCUGCAcgGCgACGgugacCUCCUGCAgCAGCAg -3'
miRNA:   3'- cGACGU--UG-UGC-----GAGGACGUgGUCGUg -5'
25505 5' -56 NC_005337.1 + 1127 0.69 0.707467
Target:  5'- aGCcGCAGCACGCgcgcgaccagcUCCgcggggagcGCGCCGGCGg -3'
miRNA:   3'- -CGaCGUUGUGCG-----------AGGa--------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 1180 0.66 0.848147
Target:  5'- cGgaGC-GCACGgauCUCCUGCauccaggcggccACCGGCGCc -3'
miRNA:   3'- -CgaCGuUGUGC---GAGGACG------------UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 1941 0.69 0.707467
Target:  5'- uCUGCAGgucUAUGCU-CUGgGCCAGCGCc -3'
miRNA:   3'- cGACGUU---GUGCGAgGACgUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 2082 0.72 0.541167
Target:  5'- --cGCgAGCGCGCUcgacgCCaGCGCCAGCGCc -3'
miRNA:   3'- cgaCG-UUGUGCGA-----GGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 2338 0.7 0.666043
Target:  5'- aGCaGguACA-GCUCCgGgGCCAGCGCg -3'
miRNA:   3'- -CGaCguUGUgCGAGGaCgUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 2547 0.67 0.80586
Target:  5'- uCUGCGGCACGCggaugcugcccgcgaUCUUGCgguucucgauguuaGCCAcGCGCg -3'
miRNA:   3'- cGACGUUGUGCG---------------AGGACG--------------UGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 2697 0.66 0.871662
Target:  5'- aGCUGCGGCguggggACGCggaggaGCACgAGCGCg -3'
miRNA:   3'- -CGACGUUG------UGCGagga--CGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 2997 0.69 0.676466
Target:  5'- cCUGCGACugGCggacgggcUCCggcaGCGCguGCGCg -3'
miRNA:   3'- cGACGUUGugCG--------AGGa---CGUGguCGUG- -5'
25505 5' -56 NC_005337.1 + 3112 0.67 0.795786
Target:  5'- cGCgaccGCGAC-CGCggccggCCUcGCGuCCAGCGCg -3'
miRNA:   3'- -CGa---CGUUGuGCGa-----GGA-CGU-GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 3948 0.74 0.4223
Target:  5'- aGCUGCAGCAgCGCUCgUacacguccacguacGCACCGGCc- -3'
miRNA:   3'- -CGACGUUGU-GCGAGgA--------------CGUGGUCGug -5'
25505 5' -56 NC_005337.1 + 4101 0.7 0.610536
Target:  5'- cGCgUGCuccGCGCGCacggCCUccgaaagcgcgcgaGCGCCAGCGCg -3'
miRNA:   3'- -CG-ACGu--UGUGCGa---GGA--------------CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 4473 0.7 0.64512
Target:  5'- cGC-GCGGCAggUGCUCUgcauCGCCAGCACg -3'
miRNA:   3'- -CGaCGUUGU--GCGAGGac--GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 4970 0.68 0.757664
Target:  5'- aGUUGCcggAGCGCGCgCCccCACCAGCAUu -3'
miRNA:   3'- -CGACG---UUGUGCGaGGacGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 5539 0.7 0.624155
Target:  5'- uCUGUcACGCGCUCCaGCAgCGGCucGCg -3'
miRNA:   3'- cGACGuUGUGCGAGGaCGUgGUCG--UG- -5'
25505 5' -56 NC_005337.1 + 5566 0.66 0.8562
Target:  5'- --cGguACACGCgcgCCaGCcgcgucGCCAGCGCg -3'
miRNA:   3'- cgaCguUGUGCGa--GGaCG------UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 5869 0.66 0.848147
Target:  5'- gGCUGCGugGCGagagcgGcCGCCAGCAUg -3'
miRNA:   3'- -CGACGUugUGCgagga-C-GUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.