miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 133747 0.68 0.767394
Target:  5'- cGCcgGCAGCugGagcgCCUGCGCC-GCGa -3'
miRNA:   3'- -CGa-CGUUGugCga--GGACGUGGuCGUg -5'
25505 5' -56 NC_005337.1 + 133747 0.68 0.767394
Target:  5'- cGCcgGCAGCugGagcgCCUGCGCC-GCGa -3'
miRNA:   3'- -CGa-CGUUGugCga--GGACGUGGuCGUg -5'
25505 5' -56 NC_005337.1 + 133396 0.69 0.676466
Target:  5'- cCUGCucGGCGCGCUCUUccgcccggccGCGCCcGCGCu -3'
miRNA:   3'- cGACG--UUGUGCGAGGA----------CGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 133396 0.69 0.676466
Target:  5'- cCUGCucGGCGCGCUCUUccgcccggccGCGCCcGCGCu -3'
miRNA:   3'- cGACG--UUGUGCGAGGA----------CGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 133195 0.66 0.8562
Target:  5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3'
miRNA:   3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5'
25505 5' -56 NC_005337.1 + 133195 0.66 0.8562
Target:  5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3'
miRNA:   3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5'
25505 5' -56 NC_005337.1 + 133162 0.77 0.275314
Target:  5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3'
miRNA:   3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5'
25505 5' -56 NC_005337.1 + 133162 0.77 0.275314
Target:  5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3'
miRNA:   3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5'
25505 5' -56 NC_005337.1 + 132952 0.75 0.364486
Target:  5'- uCUGCAGCGCGCuggaccUCCUGCGCC-GC-Cg -3'
miRNA:   3'- cGACGUUGUGCG------AGGACGUGGuCGuG- -5'
25505 5' -56 NC_005337.1 + 132587 0.68 0.737865
Target:  5'- uGUUGCGACGCGCg-CUGCGgCuGCGg -3'
miRNA:   3'- -CGACGUUGUGCGagGACGUgGuCGUg -5'
25505 5' -56 NC_005337.1 + 132506 0.66 0.864041
Target:  5'- cCUGCAagaACACGCUgCUGCAgCCcuucguccgGGCGg -3'
miRNA:   3'- cGACGU---UGUGCGAgGACGU-GG---------UCGUg -5'
25505 5' -56 NC_005337.1 + 132361 1.12 0.001173
Target:  5'- cGCUGCAACACGCUCCUGCACCAGCACg -3'
miRNA:   3'- -CGACGUUGUGCGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 132185 0.73 0.485287
Target:  5'- gGCUcGCGGCGCGCgccgacaccgugcgCCUGCugCugcGGCACg -3'
miRNA:   3'- -CGA-CGUUGUGCGa-------------GGACGugG---UCGUG- -5'
25505 5' -56 NC_005337.1 + 132163 0.68 0.776997
Target:  5'- cGCUGCcACACGgaCgCgacggagGCGCUGGCGCu -3'
miRNA:   3'- -CGACGuUGUGCgaG-Ga------CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 132078 0.67 0.804953
Target:  5'- gGCcGCGcccGCGucCGCcgCCUGCGCCGuGCGCg -3'
miRNA:   3'- -CGaCGU---UGU--GCGa-GGACGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 131926 0.7 0.64512
Target:  5'- uGCUGCGGCGCGCUggccccggagCUGUACCuGCuCa -3'
miRNA:   3'- -CGACGUUGUGCGAg---------GACGUGGuCGuG- -5'
25505 5' -56 NC_005337.1 + 131834 0.71 0.571991
Target:  5'- cGCUGC-ACACGUaCCUGCACUAcgACg -3'
miRNA:   3'- -CGACGuUGUGCGaGGACGUGGUcgUG- -5'
25505 5' -56 NC_005337.1 + 131471 0.66 0.8562
Target:  5'- cCUGCAGCAgCGC-CUagUGCACaugCGGCACc -3'
miRNA:   3'- cGACGUUGU-GCGaGG--ACGUG---GUCGUG- -5'
25505 5' -56 NC_005337.1 + 131366 0.66 0.864041
Target:  5'- --gGCGACGcCGCUCCUGgACguGguCu -3'
miRNA:   3'- cgaCGUUGU-GCGAGGACgUGguCguG- -5'
25505 5' -56 NC_005337.1 + 131319 0.66 0.871662
Target:  5'- uGCgagGCGGagacCGCGCUCaugcGCGCCGuGCGCg -3'
miRNA:   3'- -CGa--CGUU----GUGCGAGga--CGUGGU-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.