miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 99296 0.66 0.848147
Target:  5'- gGC-GCGGCgcgGCGUUCCgcaGCGCCGGguCg -3'
miRNA:   3'- -CGaCGUUG---UGCGAGGa--CGUGGUCguG- -5'
25505 5' -56 NC_005337.1 + 99523 0.66 0.8562
Target:  5'- uCUGCGACgACGCggCCcggUGCGCCGccgacugcucGCGCg -3'
miRNA:   3'- cGACGUUG-UGCGa-GG---ACGUGGU----------CGUG- -5'
25505 5' -56 NC_005337.1 + 51208 0.66 0.848147
Target:  5'- aCUGCAGCugGUggaCgUGCAcacgcCCAGCAg -3'
miRNA:   3'- cGACGUUGugCGa--GgACGU-----GGUCGUg -5'
25505 5' -56 NC_005337.1 + 33391 0.66 0.8562
Target:  5'- cCUGCAccgGC-UGCUCCaUGCGCgucauCGGCACg -3'
miRNA:   3'- cGACGU---UGuGCGAGG-ACGUG-----GUCGUG- -5'
25505 5' -56 NC_005337.1 + 31304 0.66 0.851393
Target:  5'- cGCUGCucgaagcGCAuccccacgaccacggUGUUCucgcaCUGCACCAGCACc -3'
miRNA:   3'- -CGACGu------UGU---------------GCGAG-----GACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 77101 0.66 0.839888
Target:  5'- aGgUGCGGCACauGCUCC-GCAgCAcGCGCc -3'
miRNA:   3'- -CgACGUUGUG--CGAGGaCGUgGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 6386 0.66 0.839888
Target:  5'- --cGC-ACGCGCUCgCcgGCGCCGcGCGCc -3'
miRNA:   3'- cgaCGuUGUGCGAG-Ga-CGUGGU-CGUG- -5'
25505 5' -56 NC_005337.1 + 56488 0.66 0.831431
Target:  5'- uGCUGCcguACGCGCUCCccaacuccGCggACCccgaGGCGCg -3'
miRNA:   3'- -CGACGu--UGUGCGAGGa-------CG--UGG----UCGUG- -5'
25505 5' -56 NC_005337.1 + 119829 0.66 0.848147
Target:  5'- --gGCAGCgcgGCGCUCgguacccgGCGCCAGCGg -3'
miRNA:   3'- cgaCGUUG---UGCGAGga------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 125263 0.66 0.84733
Target:  5'- aCUGCAcguacucAUGCGCUgCaGCcCCGGCACg -3'
miRNA:   3'- cGACGU-------UGUGCGAgGaCGuGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 127500 0.66 0.839888
Target:  5'- --cGCGgggaguucgaccGCACGCcCUUGCACCuGUACa -3'
miRNA:   3'- cgaCGU------------UGUGCGaGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 69945 0.66 0.831431
Target:  5'- cGCgGCGcCACGCUCC-GCGuggUgGGCACg -3'
miRNA:   3'- -CGaCGUuGUGCGAGGaCGU---GgUCGUG- -5'
25505 5' -56 NC_005337.1 + 129227 0.66 0.839888
Target:  5'- uGCUGUGGCGCGacccCgCUGCAUCuGUACg -3'
miRNA:   3'- -CGACGUUGUGCga--G-GACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 75997 0.66 0.831431
Target:  5'- gGCgaagGUGGC-CGC-CgUGCGCCGGUACa -3'
miRNA:   3'- -CGa---CGUUGuGCGaGgACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 16003 0.66 0.8522
Target:  5'- aGCUGCGagaccguACGCGCggCCggcagguacacgcGCugCGGCGCc -3'
miRNA:   3'- -CGACGU-------UGUGCGa-GGa------------CGugGUCGUG- -5'
25505 5' -56 NC_005337.1 + 122726 0.66 0.833138
Target:  5'- uGCUGUcGCACGUgcccgcggacgaCCUGCGgccacccugcgcugcCCGGCGCa -3'
miRNA:   3'- -CGACGuUGUGCGa-----------GGACGU---------------GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 6448 0.66 0.874647
Target:  5'- uGCgGuCGACgACGCUCCgcacguugacgucaGCGCCGGCGu -3'
miRNA:   3'- -CGaC-GUUG-UGCGAGGa-------------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 100896 0.66 0.8562
Target:  5'- cGCgggGCG--GCGCUCCgacgacuacaugUGCACCAccguGCGCa -3'
miRNA:   3'- -CGa--CGUugUGCGAGG------------ACGUGGU----CGUG- -5'
25505 5' -56 NC_005337.1 + 133195 0.66 0.8562
Target:  5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3'
miRNA:   3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5'
25505 5' -56 NC_005337.1 + 95546 0.66 0.831431
Target:  5'- --cGCAguGCGCGgUCUUGUACCcguuggcgAGCACg -3'
miRNA:   3'- cgaCGU--UGUGCgAGGACGUGG--------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.