miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 94789 0.73 0.47174
Target:  5'- aGCaGCAGCGCGCgcgCgU-CGCCGGCACg -3'
miRNA:   3'- -CGaCGUUGUGCGa--GgAcGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 8713 0.76 0.325049
Target:  5'- cCUGgcCAGCACGCUUCUGCACaCGcGCACg -3'
miRNA:   3'- cGAC--GUUGUGCGAGGACGUG-GU-CGUG- -5'
25505 5' -56 NC_005337.1 + 28012 0.75 0.389688
Target:  5'- uCUGCucCACGCUgcccugcaucgCCUGcCGCCGGCACg -3'
miRNA:   3'- cGACGuuGUGCGA-----------GGAC-GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 122540 0.74 0.407111
Target:  5'- cGCgGCGACGCGCg-CUGCAgCCGGUGCu -3'
miRNA:   3'- -CGaCGUUGUGCGagGACGU-GGUCGUG- -5'
25505 5' -56 NC_005337.1 + 54091 0.74 0.407111
Target:  5'- cGCgGCAGgaGCGCgUCCgcGCGCCGGCACg -3'
miRNA:   3'- -CGaCGUUg-UGCG-AGGa-CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 3948 0.74 0.4223
Target:  5'- aGCUGCAGCAgCGCUCgUacacguccacguacGCACCGGCc- -3'
miRNA:   3'- -CGACGUUGU-GCGAGgA--------------CGUGGUCGug -5'
25505 5' -56 NC_005337.1 + 115533 0.74 0.434141
Target:  5'- -gUGUAcgGCAUGUUCCggucagagGCGCCAGCGCg -3'
miRNA:   3'- cgACGU--UGUGCGAGGa-------CGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 60932 0.74 0.434141
Target:  5'- --cGCGACGCGCcacugCC-GCGCCGGCAUg -3'
miRNA:   3'- cgaCGUUGUGCGa----GGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 71420 0.73 0.452728
Target:  5'- --cGCuACGCGUUCCUGCGCCuGCu- -3'
miRNA:   3'- cgaCGuUGUGCGAGGACGUGGuCGug -5'
25505 5' -56 NC_005337.1 + 128289 0.76 0.308002
Target:  5'- uCUGCAACGCGCgcgCCUgGCGCCgucugcucgcgcgcGGCGCg -3'
miRNA:   3'- cGACGUUGUGCGa--GGA-CGUGG--------------UCGUG- -5'
25505 5' -56 NC_005337.1 + 105311 0.76 0.302952
Target:  5'- cGCUGC-GCACGCcCCaguUGC-CCAGCACg -3'
miRNA:   3'- -CGACGuUGUGCGaGG---ACGuGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 54657 0.77 0.282029
Target:  5'- uCUGCAuccgcuGCGgGCUCCUGCGCUcGCGCg -3'
miRNA:   3'- cGACGU------UGUgCGAGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 128001 0.83 0.127985
Target:  5'- uGCUGCGGC-UGCUCCUGgaCGCCGGCGCc -3'
miRNA:   3'- -CGACGUUGuGCGAGGAC--GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 52147 0.82 0.13143
Target:  5'- cGCgUGUcGCGCGCUCaUGCGCCAGCGCg -3'
miRNA:   3'- -CG-ACGuUGUGCGAGgACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 51636 0.81 0.166489
Target:  5'- aGCUGCggUcgGCGCUCCgcgGuCGCCAGCGCc -3'
miRNA:   3'- -CGACGuuG--UGCGAGGa--C-GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 131159 0.78 0.231855
Target:  5'- uGCUGC-ACACGCUgCUGCugCugauGCGCg -3'
miRNA:   3'- -CGACGuUGUGCGAgGACGugGu---CGUG- -5'
25505 5' -56 NC_005337.1 + 81671 0.78 0.231855
Target:  5'- uGCUGCAuguGCugGCUCUgcuugGcCGCCAGCGCc -3'
miRNA:   3'- -CGACGU---UGugCGAGGa----C-GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 101492 0.78 0.231855
Target:  5'- cGCUGCu-CGCGCUCaUGCGCgAGCGCu -3'
miRNA:   3'- -CGACGuuGUGCGAGgACGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 128051 0.78 0.262268
Target:  5'- cGCgGgGACACGCUgCUGCACCAcCACa -3'
miRNA:   3'- -CGaCgUUGUGCGAgGACGUGGUcGUG- -5'
25505 5' -56 NC_005337.1 + 133162 0.77 0.275314
Target:  5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3'
miRNA:   3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.