miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 132361 1.12 0.001173
Target:  5'- cGCUGCAACACGCUCCUGCACCAGCACg -3'
miRNA:   3'- -CGACGUUGUGCGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 56346 0.73 0.480427
Target:  5'- aGCUGCc-CACGCUCUucgGCACCGacguaguGCACg -3'
miRNA:   3'- -CGACGuuGUGCGAGGa--CGUGGU-------CGUG- -5'
25505 5' -56 NC_005337.1 + 72283 0.73 0.491149
Target:  5'- uGCUGUAcaaguACGUGUUCCUGUccaGCCGGCACc -3'
miRNA:   3'- -CGACGU-----UGUGCGAGGACG---UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 6448 0.66 0.874647
Target:  5'- uGCgGuCGACgACGCUCCgcacguugacgucaGCGCCGGCGu -3'
miRNA:   3'- -CGaC-GUUG-UGCGAGGa-------------CGUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 80185 0.77 0.268727
Target:  5'- cGC-GCgGACGCGCUCCUGCcGCgGGCGCu -3'
miRNA:   3'- -CGaCG-UUGUGCGAGGACG-UGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 130779 0.77 0.275314
Target:  5'- cGCcaCAACAacCUCCUGCACCAGCACg -3'
miRNA:   3'- -CGacGUUGUgcGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 68677 0.77 0.282029
Target:  5'- uGCaGCAGCGCGCUCUUG-GCCuGCGCg -3'
miRNA:   3'- -CGaCGUUGUGCGAGGACgUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 87946 0.77 0.295847
Target:  5'- gGCgGCAGCcCGgacCUCCUGCGCCuGCACg -3'
miRNA:   3'- -CGaCGUUGuGC---GAGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 116185 0.75 0.381162
Target:  5'- uGCaUGCGGaacacCACGCUCCUcUGCCAGCGCg -3'
miRNA:   3'- -CG-ACGUU-----GUGCGAGGAcGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 105072 0.73 0.44338
Target:  5'- cGCUGCGcaGCGC-CUCCUucgGCACgGGCGCc -3'
miRNA:   3'- -CGACGU--UGUGcGAGGA---CGUGgUCGUG- -5'
25505 5' -56 NC_005337.1 + 24502 0.74 0.425015
Target:  5'- cGCgGCGACGCGCUCgaGCccgugcccaaGCCGGCGg -3'
miRNA:   3'- -CGaCGUUGUGCGAGgaCG----------UGGUCGUg -5'
25505 5' -56 NC_005337.1 + 132952 0.75 0.364486
Target:  5'- uCUGCAGCGCGCuggaccUCCUGCGCC-GC-Cg -3'
miRNA:   3'- cGACGUUGUGCG------AGGACGUGGuCGuG- -5'
25505 5' -56 NC_005337.1 + 11738 0.82 0.13143
Target:  5'- gGCUGCAGCGCGCgucgCC-GCGCCAGgGCc -3'
miRNA:   3'- -CGACGUUGUGCGa---GGaCGUGGUCgUG- -5'
25505 5' -56 NC_005337.1 + 83884 0.74 0.434141
Target:  5'- cGC-GCGGCGCGCcCCcGCGCCAGgCGCc -3'
miRNA:   3'- -CGaCGUUGUGCGaGGaCGUGGUC-GUG- -5'
25505 5' -56 NC_005337.1 + 87903 0.81 0.158037
Target:  5'- gGCUGacgcGCugGCgcgCCUGCGCCGGCGCu -3'
miRNA:   3'- -CGACgu--UGugCGa--GGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 111972 0.75 0.35634
Target:  5'- aGCgUGC-GCGCGUUCCUGUcCCGGUACa -3'
miRNA:   3'- -CG-ACGuUGUGCGAGGACGuGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 38951 0.73 0.44338
Target:  5'- aCUGCGACGCGCaCCgaucgGCGCCcgaguGCGCg -3'
miRNA:   3'- cGACGUUGUGCGaGGa----CGUGGu----CGUG- -5'
25505 5' -56 NC_005337.1 + 132185 0.73 0.485287
Target:  5'- gGCUcGCGGCGCGCgccgacaccgugcgCCUGCugCugcGGCACg -3'
miRNA:   3'- -CGA-CGUUGUGCGa-------------GGACGugG---UCGUG- -5'
25505 5' -56 NC_005337.1 + 114386 0.8 0.189415
Target:  5'- --cGCGgacuACGCGCUCCUGUGCCGGUGCa -3'
miRNA:   3'- cgaCGU----UGUGCGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 133162 0.77 0.275314
Target:  5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3'
miRNA:   3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.