Results 1 - 20 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25505 | 5' | -56 | NC_005337.1 | + | 132361 | 1.12 | 0.001173 |
Target: 5'- cGCUGCAACACGCUCCUGCACCAGCACg -3' miRNA: 3'- -CGACGUUGUGCGAGGACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 129669 | 0.99 | 0.009355 |
Target: 5'- uCUGCAggaACACGCUCCUGCACCAGCACg -3' miRNA: 3'- cGACGU---UGUGCGAGGACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 128001 | 0.83 | 0.127985 |
Target: 5'- uGCUGCGGC-UGCUCCUGgaCGCCGGCGCc -3' miRNA: 3'- -CGACGUUGuGCGAGGAC--GUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 11738 | 0.82 | 0.13143 |
Target: 5'- gGCUGCAGCGCGCgucgCC-GCGCCAGgGCc -3' miRNA: 3'- -CGACGUUGUGCGa---GGaCGUGGUCgUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 52147 | 0.82 | 0.13143 |
Target: 5'- cGCgUGUcGCGCGCUCaUGCGCCAGCGCg -3' miRNA: 3'- -CG-ACGuUGUGCGAGgACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 87903 | 0.81 | 0.158037 |
Target: 5'- gGCUGacgcGCugGCgcgCCUGCGCCGGCGCu -3' miRNA: 3'- -CGACgu--UGugCGa--GGACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 51636 | 0.81 | 0.166489 |
Target: 5'- aGCUGCggUcgGCGCUCCgcgGuCGCCAGCGCc -3' miRNA: 3'- -CGACGuuG--UGCGAGGa--C-GUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 114386 | 0.8 | 0.189415 |
Target: 5'- --cGCGgacuACGCGCUCCUGUGCCGGUGCa -3' miRNA: 3'- cgaCGU----UGUGCGAGGACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 81671 | 0.78 | 0.231855 |
Target: 5'- uGCUGCAuguGCugGCUCUgcuugGcCGCCAGCGCc -3' miRNA: 3'- -CGACGU---UGugCGAGGa----C-GUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 131159 | 0.78 | 0.231855 |
Target: 5'- uGCUGC-ACACGCUgCUGCugCugauGCGCg -3' miRNA: 3'- -CGACGuUGUGCGAgGACGugGu---CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 101492 | 0.78 | 0.231855 |
Target: 5'- cGCUGCu-CGCGCUCaUGCGCgAGCGCu -3' miRNA: 3'- -CGACGuuGUGCGAGgACGUGgUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 128051 | 0.78 | 0.262268 |
Target: 5'- cGCgGgGACACGCUgCUGCACCAcCACa -3' miRNA: 3'- -CGaCgUUGUGCGAgGACGUGGUcGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 80185 | 0.77 | 0.268727 |
Target: 5'- cGC-GCgGACGCGCUCCUGCcGCgGGCGCu -3' miRNA: 3'- -CGaCG-UUGUGCGAGGACG-UGgUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 133162 | 0.77 | 0.275314 |
Target: 5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3' miRNA: 3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 130779 | 0.77 | 0.275314 |
Target: 5'- cGCcaCAACAacCUCCUGCACCAGCACg -3' miRNA: 3'- -CGacGUUGUgcGAGGACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 133162 | 0.77 | 0.275314 |
Target: 5'- uGCUGCGGC-UGCUCCcgGCGgCGGCGCu -3' miRNA: 3'- -CGACGUUGuGCGAGGa-CGUgGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 54657 | 0.77 | 0.282029 |
Target: 5'- uCUGCAuccgcuGCGgGCUCCUGCGCUcGCGCg -3' miRNA: 3'- cGACGU------UGUgCGAGGACGUGGuCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 68677 | 0.77 | 0.282029 |
Target: 5'- uGCaGCAGCGCGCUCUUG-GCCuGCGCg -3' miRNA: 3'- -CGaCGUUGUGCGAGGACgUGGuCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 87946 | 0.77 | 0.295847 |
Target: 5'- gGCgGCAGCcCGgacCUCCUGCGCCuGCACg -3' miRNA: 3'- -CGaCGUUGuGC---GAGGACGUGGuCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 105311 | 0.76 | 0.302952 |
Target: 5'- cGCUGC-GCACGCcCCaguUGC-CCAGCACg -3' miRNA: 3'- -CGACGuUGUGCGaGG---ACGuGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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