Results 21 - 40 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25505 | 5' | -56 | NC_005337.1 | + | 128289 | 0.76 | 0.308002 |
Target: 5'- uCUGCAACGCGCgcgCCUgGCGCCgucugcucgcgcgcGGCGCg -3' miRNA: 3'- cGACGUUGUGCGa--GGA-CGUGG--------------UCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 8713 | 0.76 | 0.325049 |
Target: 5'- cCUGgcCAGCACGCUUCUGCACaCGcGCACg -3' miRNA: 3'- cGAC--GUUGUGCGAGGACGUG-GU-CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 111972 | 0.75 | 0.35634 |
Target: 5'- aGCgUGC-GCGCGUUCCUGUcCCGGUACa -3' miRNA: 3'- -CG-ACGuUGUGCGAGGACGuGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 132952 | 0.75 | 0.364486 |
Target: 5'- uCUGCAGCGCGCuggaccUCCUGCGCC-GC-Cg -3' miRNA: 3'- cGACGUUGUGCG------AGGACGUGGuCGuG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 116185 | 0.75 | 0.381162 |
Target: 5'- uGCaUGCGGaacacCACGCUCCUcUGCCAGCGCg -3' miRNA: 3'- -CG-ACGUU-----GUGCGAGGAcGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 28012 | 0.75 | 0.389688 |
Target: 5'- uCUGCucCACGCUgcccugcaucgCCUGcCGCCGGCACg -3' miRNA: 3'- cGACGuuGUGCGA-----------GGAC-GUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 130884 | 0.74 | 0.407111 |
Target: 5'- aGCgGCAACACGC-CgCUGCACCucauggccGCGCa -3' miRNA: 3'- -CGaCGUUGUGCGaG-GACGUGGu-------CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 54091 | 0.74 | 0.407111 |
Target: 5'- cGCgGCAGgaGCGCgUCCgcGCGCCGGCACg -3' miRNA: 3'- -CGaCGUUg-UGCG-AGGa-CGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 122540 | 0.74 | 0.407111 |
Target: 5'- cGCgGCGACGCGCg-CUGCAgCCGGUGCu -3' miRNA: 3'- -CGaCGUUGUGCGagGACGU-GGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 3948 | 0.74 | 0.4223 |
Target: 5'- aGCUGCAGCAgCGCUCgUacacguccacguacGCACCGGCc- -3' miRNA: 3'- -CGACGUUGU-GCGAGgA--------------CGUGGUCGug -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 24502 | 0.74 | 0.425015 |
Target: 5'- cGCgGCGACGCGCUCgaGCccgugcccaaGCCGGCGg -3' miRNA: 3'- -CGaCGUUGUGCGAGgaCG----------UGGUCGUg -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 83884 | 0.74 | 0.434141 |
Target: 5'- cGC-GCGGCGCGCcCCcGCGCCAGgCGCc -3' miRNA: 3'- -CGaCGUUGUGCGaGGaCGUGGUC-GUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 115533 | 0.74 | 0.434141 |
Target: 5'- -gUGUAcgGCAUGUUCCggucagagGCGCCAGCGCg -3' miRNA: 3'- cgACGU--UGUGCGAGGa-------CGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 60932 | 0.74 | 0.434141 |
Target: 5'- --cGCGACGCGCcacugCC-GCGCCGGCAUg -3' miRNA: 3'- cgaCGUUGUGCGa----GGaCGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 38951 | 0.73 | 0.44338 |
Target: 5'- aCUGCGACGCGCaCCgaucgGCGCCcgaguGCGCg -3' miRNA: 3'- cGACGUUGUGCGaGGa----CGUGGu----CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 105072 | 0.73 | 0.44338 |
Target: 5'- cGCUGCGcaGCGC-CUCCUucgGCACgGGCGCc -3' miRNA: 3'- -CGACGU--UGUGcGAGGA---CGUGgUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 71420 | 0.73 | 0.452728 |
Target: 5'- --cGCuACGCGUUCCUGCGCCuGCu- -3' miRNA: 3'- cgaCGuUGUGCGAGGACGUGGuCGug -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 94789 | 0.73 | 0.47174 |
Target: 5'- aGCaGCAGCGCGCgcgCgU-CGCCGGCACg -3' miRNA: 3'- -CGaCGUUGUGCGa--GgAcGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 56346 | 0.73 | 0.480427 |
Target: 5'- aGCUGCc-CACGCUCUucgGCACCGacguaguGCACg -3' miRNA: 3'- -CGACGuuGUGCGAGGa--CGUGGU-------CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 88006 | 0.73 | 0.481397 |
Target: 5'- aGCUGCuGCACGCgcauggucagCaggaUGUGCCGGCGCa -3' miRNA: 3'- -CGACGuUGUGCGa---------Gg---ACGUGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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