Results 21 - 40 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25505 | 5' | -56 | NC_005337.1 | + | 100554 | 0.66 | 0.864041 |
Target: 5'- uGCUGCGcgAC-CGCaUCCUcgGCGCCAcCACc -3' miRNA: 3'- -CGACGU--UGuGCG-AGGA--CGUGGUcGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 114280 | 0.66 | 0.832286 |
Target: 5'- --cGCAGCACGUgcugcccgaggaccUCCUggaggagcucucgcgGCGCCGGUGCg -3' miRNA: 3'- cgaCGUUGUGCG--------------AGGA---------------CGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 51208 | 0.66 | 0.848147 |
Target: 5'- aCUGCAGCugGUggaCgUGCAcacgcCCAGCAg -3' miRNA: 3'- cGACGUUGugCGa--GgACGU-----GGUCGUg -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 56488 | 0.66 | 0.831431 |
Target: 5'- uGCUGCcguACGCGCUCCccaacuccGCggACCccgaGGCGCg -3' miRNA: 3'- -CGACGu--UGUGCGAGGa-------CG--UGG----UCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 75997 | 0.66 | 0.831431 |
Target: 5'- gGCgaagGUGGC-CGC-CgUGCGCCGGUACa -3' miRNA: 3'- -CGa---CGUUGuGCGaGgACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 31232 | 0.66 | 0.859362 |
Target: 5'- cGCUGCAGCagcaucagcaggucGCgGCUCCggcagcggaugcggUGCGCCAGgGa -3' miRNA: 3'- -CGACGUUG--------------UG-CGAGG--------------ACGUGGUCgUg -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 100896 | 0.66 | 0.8562 |
Target: 5'- cGCgggGCG--GCGCUCCgacgacuacaugUGCACCAccguGCGCa -3' miRNA: 3'- -CGa--CGUugUGCGAGG------------ACGUGGU----CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 118777 | 0.66 | 0.864041 |
Target: 5'- uGCUgGCGACGCugUCC-GCAgCAGCGCc -3' miRNA: 3'- -CGA-CGUUGUGcgAGGaCGUgGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 69945 | 0.66 | 0.831431 |
Target: 5'- cGCgGCGcCACGCUCC-GCGuggUgGGCACg -3' miRNA: 3'- -CGaCGUuGUGCGAGGaCGU---GgUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 77101 | 0.66 | 0.839888 |
Target: 5'- aGgUGCGGCACauGCUCC-GCAgCAcGCGCc -3' miRNA: 3'- -CgACGUUGUG--CGAGGaCGUgGU-CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 95546 | 0.66 | 0.831431 |
Target: 5'- --cGCAguGCGCGgUCUUGUACCcguuggcgAGCACg -3' miRNA: 3'- cgaCGU--UGUGCgAGGACGUGG--------UCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 14643 | 0.66 | 0.8562 |
Target: 5'- aGCgcacCGAgGCGUccUCCgGCAUCAGCGCg -3' miRNA: 3'- -CGac--GUUgUGCG--AGGaCGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 99523 | 0.66 | 0.8562 |
Target: 5'- uCUGCGACgACGCggCCcggUGCGCCGccgacugcucGCGCg -3' miRNA: 3'- cGACGUUG-UGCGa-GG---ACGUGGU----------CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 31304 | 0.66 | 0.851393 |
Target: 5'- cGCUGCucgaagcGCAuccccacgaccacggUGUUCucgcaCUGCACCAGCACc -3' miRNA: 3'- -CGACGu------UGU---------------GCGAG-----GACGUGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 123966 | 0.66 | 0.871662 |
Target: 5'- cGCUGCAcauAgACGCgaaCgGCGCCGauGCGCg -3' miRNA: 3'- -CGACGU---UgUGCGag-GaCGUGGU--CGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 125263 | 0.66 | 0.84733 |
Target: 5'- aCUGCAcguacucAUGCGCUgCaGCcCCGGCACg -3' miRNA: 3'- cGACGU-------UGUGCGAgGaCGuGGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 133195 | 0.66 | 0.8562 |
Target: 5'- gGCUGUAGCcCGCUCCgucccGCaguccgcccccGCCGGCc- -3' miRNA: 3'- -CGACGUUGuGCGAGGa----CG-----------UGGUCGug -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 16003 | 0.66 | 0.8522 |
Target: 5'- aGCUGCGagaccguACGCGCggCCggcagguacacgcGCugCGGCGCc -3' miRNA: 3'- -CGACGU-------UGUGCGa-GGa------------CGugGUCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 124023 | 0.66 | 0.831431 |
Target: 5'- aGCUGCugauguGGCugGCcaCCUGCAaggAGCACa -3' miRNA: 3'- -CGACG------UUGugCGa-GGACGUgg-UCGUG- -5' |
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25505 | 5' | -56 | NC_005337.1 | + | 67863 | 0.66 | 0.87091 |
Target: 5'- gGCUGCAGCGCGgUgagguugUCgagGCG-CAGCGCg -3' miRNA: 3'- -CGACGUUGUGCgA-------GGa--CGUgGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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