miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 16060 0.68 0.747817
Target:  5'- aCUGCAugAUgacgucgggcgGCUCCgcgccCACCGGCGCg -3'
miRNA:   3'- cGACGUugUG-----------CGAGGac---GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 16361 0.69 0.676466
Target:  5'- cCUuCGGCGCcCUCgaGCACCAGCGCc -3'
miRNA:   3'- cGAcGUUGUGcGAGgaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 17035 0.66 0.871662
Target:  5'- aCUGCGuCGCGUUCC-GCGCgGucuGCACg -3'
miRNA:   3'- cGACGUuGUGCGAGGaCGUGgU---CGUG- -5'
25505 5' -56 NC_005337.1 + 17321 0.68 0.757664
Target:  5'- cCUGCAGCACcacguaGCUCUUGagguaCGGCACg -3'
miRNA:   3'- cGACGUUGUG------CGAGGACgug--GUCGUG- -5'
25505 5' -56 NC_005337.1 + 17658 0.67 0.813955
Target:  5'- gGCggGCGACACG-UCCacGCGCC-GCACc -3'
miRNA:   3'- -CGa-CGUUGUGCgAGGa-CGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 18724 0.69 0.676466
Target:  5'- aGCUGCGGCGCGCUggcgccUCUG-ACCGGaACa -3'
miRNA:   3'- -CGACGUUGUGCGA------GGACgUGGUCgUG- -5'
25505 5' -56 NC_005337.1 + 19692 0.67 0.813955
Target:  5'- gGCcGCGugGCGUaCa-GCGCCGGCGCc -3'
miRNA:   3'- -CGaCGUugUGCGaGgaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 19947 0.71 0.551386
Target:  5'- uGCU-CAGCGaagagGCUCC-GCACCGGCGCc -3'
miRNA:   3'- -CGAcGUUGUg----CGAGGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 21658 0.66 0.871662
Target:  5'- cGCUGgGGCACGUgcucgCgCUGCACUaccuGGuCACg -3'
miRNA:   3'- -CGACgUUGUGCGa----G-GACGUGG----UC-GUG- -5'
25505 5' -56 NC_005337.1 + 22162 0.7 0.655592
Target:  5'- cCUGUu-CACGCUCCUGCagaaggccggGCCcgugcGGCACa -3'
miRNA:   3'- cGACGuuGUGCGAGGACG----------UGG-----UCGUG- -5'
25505 5' -56 NC_005337.1 + 22286 0.69 0.717679
Target:  5'- --aGCGACGCGgaCgUGUACCGGgACa -3'
miRNA:   3'- cgaCGUUGUGCgaGgACGUGGUCgUG- -5'
25505 5' -56 NC_005337.1 + 23001 0.68 0.757664
Target:  5'- gGUUGCgAGCAUGCUgCgGCACUuGCGCc -3'
miRNA:   3'- -CGACG-UUGUGCGAgGaCGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 23332 0.68 0.737865
Target:  5'- aGCUGC-GCACGC-CCa--ACCAGCAg -3'
miRNA:   3'- -CGACGuUGUGCGaGGacgUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 23911 0.72 0.509923
Target:  5'- cGCUGCcGCGCGC-CCgcGCGCCcgcggcaGGCGCg -3'
miRNA:   3'- -CGACGuUGUGCGaGGa-CGUGG-------UCGUG- -5'
25505 5' -56 NC_005337.1 + 24502 0.74 0.425015
Target:  5'- cGCgGCGACGCGCUCgaGCccgugcccaaGCCGGCGg -3'
miRNA:   3'- -CGaCGUUGUGCGAGgaCG----------UGGUCGUg -5'
25505 5' -56 NC_005337.1 + 24542 0.66 0.87091
Target:  5'- uGCUGCGcACcgccgacugcucgGCGUUCCgGCGCCAuCGCc -3'
miRNA:   3'- -CGACGU-UG-------------UGCGAGGaCGUGGUcGUG- -5'
25505 5' -56 NC_005337.1 + 24752 0.69 0.68685
Target:  5'- cGCUGCAGCACGaggaCCUgGCACCGuuCAUa -3'
miRNA:   3'- -CGACGUUGUGCga--GGA-CGUGGUc-GUG- -5'
25505 5' -56 NC_005337.1 + 24990 0.7 0.624155
Target:  5'- gGCUGCAACGCGCgcauggacagcuUCCaccgcuucgacgUGCGCgCGGCGg -3'
miRNA:   3'- -CGACGUUGUGCG------------AGG------------ACGUG-GUCGUg -5'
25505 5' -56 NC_005337.1 + 25084 0.69 0.707467
Target:  5'- aGCUGCGcgACGCcgaGCUCCgccCGCgCGGCGCg -3'
miRNA:   3'- -CGACGU--UGUG---CGAGGac-GUG-GUCGUG- -5'
25505 5' -56 NC_005337.1 + 25512 0.69 0.707467
Target:  5'- cGUUGaUGACGCGCUCCagGCAgCGGCcCa -3'
miRNA:   3'- -CGAC-GUUGUGCGAGGa-CGUgGUCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.