miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 985 0.66 0.498703
Target:  5'- gGCUGGCgcggCGCGCggaGGGcGGGCGUCGc -3'
miRNA:   3'- gCGGCCG----GUGCGaa-CCC-UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 103960 0.66 0.498703
Target:  5'- uCGUCGaUCugGUggagaaggGGGAGGUGCCGGc -3'
miRNA:   3'- -GCGGCcGGugCGaa------CCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 90105 0.66 0.498703
Target:  5'- uCGCCGGUCA-GC-UGGucGGUGUCGAu -3'
miRNA:   3'- -GCGGCCGGUgCGaACCcuCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 985 0.66 0.498703
Target:  5'- gGCUGGCgcggCGCGCggaGGGcGGGCGUCGc -3'
miRNA:   3'- gCGGCCG----GUGCGaa-CCC-UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 51926 0.66 0.495947
Target:  5'- uCGgCGGCCACGCUccuggacuuccuguUGGcGGuGGUGCUGc -3'
miRNA:   3'- -GCgGCCGGUGCGA--------------ACC-CU-CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 89681 0.67 0.489545
Target:  5'- gCGCCGGaaCACGCccuugGcGGAGaCGCCGAu -3'
miRNA:   3'- -GCGGCCg-GUGCGaa---C-CCUCcGCGGCU- -5'
25506 3' -64 NC_005337.1 + 82163 0.67 0.480466
Target:  5'- uGgCGGCCACGUccgucccGGucGCGCCGAg -3'
miRNA:   3'- gCgGCCGGUGCGaac----CCucCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 33689 0.67 0.475058
Target:  5'- gGCCGGCgGgCGCcaccuccucgaagGuGGuGGCGCCGAg -3'
miRNA:   3'- gCGGCCGgU-GCGaa-----------C-CCuCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 31275 0.67 0.47147
Target:  5'- uGCgGGCCGCGCUcGGGcacguccgAGGgGCaGAa -3'
miRNA:   3'- gCGgCCGGUGCGAaCCC--------UCCgCGgCU- -5'
25506 3' -64 NC_005337.1 + 56925 0.67 0.47147
Target:  5'- aGCCGGCUccgaGCGC---GGAGGCgGCCa- -3'
miRNA:   3'- gCGGCCGG----UGCGaacCCUCCG-CGGcu -5'
25506 3' -64 NC_005337.1 + 43842 0.67 0.468787
Target:  5'- gGCCGGCgGCGCggUGGaGAucguguacugcgacGGCGUgGAc -3'
miRNA:   3'- gCGGCCGgUGCGa-ACC-CU--------------CCGCGgCU- -5'
25506 3' -64 NC_005337.1 + 133708 0.67 0.46256
Target:  5'- cCGCgCGGCCgcggcguacGCGCggcggUGGcGGaguGGCGCCGGc -3'
miRNA:   3'- -GCG-GCCGG---------UGCGa----ACC-CU---CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 62953 0.67 0.46256
Target:  5'- cCGCC-GCCGCGC--GGGucGCcGCCGAc -3'
miRNA:   3'- -GCGGcCGGUGCGaaCCCucCG-CGGCU- -5'
25506 3' -64 NC_005337.1 + 133708 0.67 0.46256
Target:  5'- cCGCgCGGCCgcggcguacGCGCggcggUGGcGGaguGGCGCCGGc -3'
miRNA:   3'- -GCG-GCCGG---------UGCGa----ACC-CU---CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 24284 0.67 0.46256
Target:  5'- gGCCGGCgcuCACGCagGGcGuGGUGCuCGAg -3'
miRNA:   3'- gCGGCCG---GUGCGaaCC-CuCCGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 66627 0.67 0.461674
Target:  5'- aCGCCuuucGGgCGgGCggUGGGAguggugcGGCGCCGAc -3'
miRNA:   3'- -GCGG----CCgGUgCGa-ACCCU-------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 74937 0.67 0.453739
Target:  5'- gCGCgCGGCCGCGC---GGAugcGGUGCUGGg -3'
miRNA:   3'- -GCG-GCCGGUGCGaacCCU---CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 44210 0.67 0.445011
Target:  5'- gCGuCUGGCCGcCGCggagcGGGcGaGCGCCGAg -3'
miRNA:   3'- -GC-GGCCGGU-GCGaa---CCCuC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 89804 0.67 0.444143
Target:  5'- gCGCCucgaacuGGCCucaGCUcGGcGAGGCGCuCGAc -3'
miRNA:   3'- -GCGG-------CCGGug-CGAaCC-CUCCGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 57067 0.67 0.440682
Target:  5'- aGCCaGGCCGCucugcgagcgcccGCUguucgccauccgcGGGuGGCGCCGGc -3'
miRNA:   3'- gCGG-CCGGUG-------------CGAa------------CCCuCCGCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.