miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 90449 0.7 0.319494
Target:  5'- cCGCCGGCC-CGCUgcagcGuGGAGGUGauGAg -3'
miRNA:   3'- -GCGGCCGGuGCGAa----C-CCUCCGCggCU- -5'
25506 3' -64 NC_005337.1 + 107066 0.7 0.319494
Target:  5'- gCGgCGGCgGCGCgccaGGGGGUGCCGc -3'
miRNA:   3'- -GCgGCCGgUGCGaac-CCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 35264 0.7 0.326509
Target:  5'- uCGCaGGCCGCGCgcaccucGGGGGGCGgCu- -3'
miRNA:   3'- -GCGgCCGGUGCGaa-----CCCUCCGCgGcu -5'
25506 3' -64 NC_005337.1 + 44103 0.7 0.326509
Target:  5'- -cCCGGCCugGCa-GGGAucagcgucGGCGUCGAg -3'
miRNA:   3'- gcGGCCGGugCGaaCCCU--------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 77782 0.7 0.326509
Target:  5'- aCGUgGGCCACGaaCUUGGcGAuauccuGGCGCCGc -3'
miRNA:   3'- -GCGgCCGGUGC--GAACC-CU------CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 48162 0.7 0.333638
Target:  5'- aGCCGGacuccUCGCGCgc-GGAGGCGCUGc -3'
miRNA:   3'- gCGGCC-----GGUGCGaacCCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 69718 0.7 0.333638
Target:  5'- uGgCGGCCACGCgguccaGGaAGGUGCCGu -3'
miRNA:   3'- gCgGCCGGUGCGaa----CCcUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 66522 0.69 0.340881
Target:  5'- aGCCGGCCgagACGCU--GGAGcugcGCGCCGc -3'
miRNA:   3'- gCGGCCGG---UGCGAacCCUC----CGCGGCu -5'
25506 3' -64 NC_005337.1 + 49580 0.69 0.341612
Target:  5'- gCGCCGGgUcCGUgggaucggcgaccagUGGGAGGCGCCc- -3'
miRNA:   3'- -GCGGCCgGuGCGa--------------ACCCUCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 121793 0.69 0.348237
Target:  5'- aCGCCGGUgcggACGC---GGAGGCGCUGGa -3'
miRNA:   3'- -GCGGCCGg---UGCGaacCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 6600 0.69 0.355705
Target:  5'- gCGCCaGGUCgGCGCccaucUGGauGAGGCGCCGGc -3'
miRNA:   3'- -GCGG-CCGG-UGCGa----ACC--CUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 1127 0.69 0.361
Target:  5'- aGCCGcaGCaCGCGCgcgaccagcuccgcgGGGAGcGCGCCGGc -3'
miRNA:   3'- gCGGC--CG-GUGCGaa-------------CCCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 66080 0.69 0.363286
Target:  5'- aCG-CGGCCGCgGCggcGGAGGCGCUGu -3'
miRNA:   3'- -GCgGCCGGUG-CGaacCCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 15871 0.69 0.366349
Target:  5'- uCGCCGGCCuCGCUcaugaccGGGuuccgcugccccagcAgGGCGCCGGa -3'
miRNA:   3'- -GCGGCCGGuGCGAa------CCC---------------U-CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 32448 0.69 0.370978
Target:  5'- uGCUGGCCACGa-UGGGcgagaaguccGGCGCgGAg -3'
miRNA:   3'- gCGGCCGGUGCgaACCCu---------CCGCGgCU- -5'
25506 3' -64 NC_005337.1 + 42538 0.69 0.370978
Target:  5'- cCGCCGGaCGCGCUgc--GGGCGCUGGu -3'
miRNA:   3'- -GCGGCCgGUGCGAacccUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 88260 0.68 0.386691
Target:  5'- uGCCGG-CGCGCc-GGcGGGCGCCGc -3'
miRNA:   3'- gCGGCCgGUGCGaaCCcUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 121834 0.68 0.39149
Target:  5'- aCGCCGGCCgACGUgcucgugaagucGGuGGGCGCCa- -3'
miRNA:   3'- -GCGGCCGG-UGCGaa----------CCcUCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 83901 0.68 0.394711
Target:  5'- cCGCCGGgUACGg--GGGcGGCGCCu- -3'
miRNA:   3'- -GCGGCCgGUGCgaaCCCuCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 95300 0.68 0.402837
Target:  5'- gGCCGGUgacgCACGCgcacucGGGCGCCGAu -3'
miRNA:   3'- gCGGCCG----GUGCGaaccc-UCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.