miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 131403 0.95 0.00577
Target:  5'- cCGCCGGCCACGC-UGGuGAGGCGCCGAu -3'
miRNA:   3'- -GCGGCCGGUGCGaACC-CUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 12715 0.79 0.081182
Target:  5'- gCGCgCGcGCCGCGCUcGaGGAGGUGCCGGa -3'
miRNA:   3'- -GCG-GC-CGGUGCGAaC-CCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 59653 0.76 0.120575
Target:  5'- cCGCCGGggaacaucacgucgUCGCgGCUccGGGAGGCGCCGAu -3'
miRNA:   3'- -GCGGCC--------------GGUG-CGAa-CCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 66038 0.76 0.127666
Target:  5'- gCGCCGGCCGCGCUccGGAacccGGaCGCCGu -3'
miRNA:   3'- -GCGGCCGGUGCGAacCCU----CC-GCGGCu -5'
25506 3' -64 NC_005337.1 + 99743 0.75 0.148014
Target:  5'- cCGCCGGCUACGCgaGGcGGGCGCg-- -3'
miRNA:   3'- -GCGGCCGGUGCGaaCCcUCCGCGgcu -5'
25506 3' -64 NC_005337.1 + 132109 0.72 0.222468
Target:  5'- aCGCUGGUCGCGCU----GGGUGCCGAc -3'
miRNA:   3'- -GCGGCCGGUGCGAacccUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 117015 0.72 0.238532
Target:  5'- gCGCCaGGCCACGCUccGGGc-GCuGCCGAc -3'
miRNA:   3'- -GCGG-CCGGUGCGAa-CCCucCG-CGGCU- -5'
25506 3' -64 NC_005337.1 + 48318 0.72 0.244098
Target:  5'- uGCgCGGgCGCGCUgacGGGcaugagccGGGCGCCGGu -3'
miRNA:   3'- gCG-GCCgGUGCGAa--CCC--------UCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 50350 0.72 0.249772
Target:  5'- cCGcCCGGCCGaGCcUGGGccagcAGGCGCCGc -3'
miRNA:   3'- -GC-GGCCGGUgCGaACCC-----UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 89959 0.71 0.254971
Target:  5'- gGCgCGGCCgcagcacGCGCUcggGGGAgcGGCGCCGu -3'
miRNA:   3'- gCG-GCCGG-------UGCGAa--CCCU--CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 64922 0.71 0.261445
Target:  5'- gGCCGGCC-CGCgcGGGAaagcGcGCGCCGu -3'
miRNA:   3'- gCGGCCGGuGCGaaCCCU----C-CGCGGCu -5'
25506 3' -64 NC_005337.1 + 123957 0.71 0.266841
Target:  5'- aGCCGGUCGCGCUgcacauaGAcgcgaacGGCGCCGAu -3'
miRNA:   3'- gCGGCCGGUGCGAacc----CU-------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 109176 0.71 0.273559
Target:  5'- gCGCCGcGCCGCGCggGcGGAgcucGGCGUCGc -3'
miRNA:   3'- -GCGGC-CGGUGCGaaC-CCU----CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 98023 0.71 0.279783
Target:  5'- gCGCUGGCCACcgacggGCUgggguucguccGGGAGcGCGCCGc -3'
miRNA:   3'- -GCGGCCGGUG------CGAa----------CCCUC-CGCGGCu -5'
25506 3' -64 NC_005337.1 + 115427 0.7 0.292567
Target:  5'- uCGCCGGCCGuccgggaguCGCUgGGGuuccuGGUGUCGGc -3'
miRNA:   3'- -GCGGCCGGU---------GCGAaCCCu----CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 88036 0.7 0.299129
Target:  5'- uGCCGGCgCACGUgcacgGGGucGUGCUGGa -3'
miRNA:   3'- gCGGCCG-GUGCGaa---CCCucCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 68247 0.7 0.305803
Target:  5'- aGCgCGGCCgGCGCgUGGGcGaGCGUCGAg -3'
miRNA:   3'- gCG-GCCGG-UGCGaACCCuC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 60949 0.7 0.305803
Target:  5'- gCGCCGGCaUGCGCaUGGGGcGcGCGCCc- -3'
miRNA:   3'- -GCGGCCG-GUGCGaACCCU-C-CGCGGcu -5'
25506 3' -64 NC_005337.1 + 20770 0.7 0.312591
Target:  5'- gGCCgcGGCCACGCgcuucgcgGGGAcgGGCguGCCGGa -3'
miRNA:   3'- gCGG--CCGGUGCGaa------CCCU--CCG--CGGCU- -5'
25506 3' -64 NC_005337.1 + 40109 0.7 0.313277
Target:  5'- uCGUCGGCaa-GCgguucuccgucgugGGGAGGCGCCGc -3'
miRNA:   3'- -GCGGCCGgugCGaa------------CCCUCCGCGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.