miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 871 0.68 0.419404
Target:  5'- gGCgCGGCCGgGCggaaGAGcGCGCCGAg -3'
miRNA:   3'- gCG-GCCGGUgCGaaccCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 871 0.68 0.419404
Target:  5'- gGCgCGGCCGgGCggaaGAGcGCGCCGAg -3'
miRNA:   3'- gCG-GCCGGUgCGaaccCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 985 0.66 0.498703
Target:  5'- gGCUGGCgcggCGCGCggaGGGcGGGCGUCGc -3'
miRNA:   3'- gCGGCCG----GUGCGaa-CCC-UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 985 0.66 0.498703
Target:  5'- gGCUGGCgcggCGCGCggaGGGcGGGCGUCGc -3'
miRNA:   3'- gCGGCCG----GUGCGaa-CCC-UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 1127 0.69 0.361
Target:  5'- aGCCGcaGCaCGCGCgcgaccagcuccgcgGGGAGcGCGCCGGc -3'
miRNA:   3'- gCGGC--CG-GUGCGaa-------------CCCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 2164 0.66 0.517242
Target:  5'- aGCCuGCCGCGCac----GGCGCCGAc -3'
miRNA:   3'- gCGGcCGGUGCGaacccuCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 2657 0.66 0.526615
Target:  5'- gCGCCGGCCgccuccACGCU---GAGuGCGCgCGAg -3'
miRNA:   3'- -GCGGCCGG------UGCGAaccCUC-CGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 6600 0.69 0.355705
Target:  5'- gCGCCaGGUCgGCGCccaucUGGauGAGGCGCCGGc -3'
miRNA:   3'- -GCGG-CCGG-UGCGa----ACC--CUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 12715 0.79 0.081182
Target:  5'- gCGCgCGcGCCGCGCUcGaGGAGGUGCCGGa -3'
miRNA:   3'- -GCG-GC-CGGUGCGAaC-CCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 15871 0.69 0.366349
Target:  5'- uCGCCGGCCuCGCUcaugaccGGGuuccgcugccccagcAgGGCGCCGGa -3'
miRNA:   3'- -GCGGCCGGuGCGAa------CCC---------------U-CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 17025 0.66 0.545545
Target:  5'- uGCgGGCCGCGCga---AGGCGCaCGGc -3'
miRNA:   3'- gCGgCCGGUGCGaacccUCCGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 20770 0.7 0.312591
Target:  5'- gGCCgcGGCCACGCgcuucgcgGGGAcgGGCguGCCGGa -3'
miRNA:   3'- gCGG--CCGGUGCGaa------CCCU--CCG--CGGCU- -5'
25506 3' -64 NC_005337.1 + 24284 0.67 0.46256
Target:  5'- gGCCGGCgcuCACGCagGGcGuGGUGCuCGAg -3'
miRNA:   3'- gCGGCCG---GUGCGaaCC-CuCCGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 28502 0.68 0.419404
Target:  5'- gCGCgCGGUCGCGCggcacugcgUGGGgcAGGCGCa-- -3'
miRNA:   3'- -GCG-GCCGGUGCGa--------ACCC--UCCGCGgcu -5'
25506 3' -64 NC_005337.1 + 28907 0.66 0.545545
Target:  5'- uGCUGGCCucCGCUacgaagucGGAGGCcuucacGCCGAc -3'
miRNA:   3'- gCGGCCGGu-GCGAac------CCUCCG------CGGCU- -5'
25506 3' -64 NC_005337.1 + 31275 0.67 0.47147
Target:  5'- uGCgGGCCGCGCUcGGGcacguccgAGGgGCaGAa -3'
miRNA:   3'- gCGgCCGGUGCGAaCCC--------UCCgCGgCU- -5'
25506 3' -64 NC_005337.1 + 32448 0.69 0.370978
Target:  5'- uGCUGGCCACGa-UGGGcgagaaguccGGCGCgGAg -3'
miRNA:   3'- gCGGCCGGUGCgaACCCu---------CCGCGgCU- -5'
25506 3' -64 NC_005337.1 + 33689 0.67 0.475058
Target:  5'- gGCCGGCgGgCGCcaccuccucgaagGuGGuGGCGCCGAg -3'
miRNA:   3'- gCGGCCGgU-GCGaa-----------C-CCuCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 34988 0.68 0.427841
Target:  5'- aCGCCGcGCCGCGCcaGGcaGAcGGCcguGCCGAa -3'
miRNA:   3'- -GCGGC-CGGUGCGaaCC--CU-CCG---CGGCU- -5'
25506 3' -64 NC_005337.1 + 35264 0.7 0.326509
Target:  5'- uCGCaGGCCGCGCgcaccucGGGGGGCGgCu- -3'
miRNA:   3'- -GCGgCCGGUGCGaa-----CCCUCCGCgGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.