miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 133708 0.67 0.46256
Target:  5'- cCGCgCGGCCgcggcguacGCGCggcggUGGcGGaguGGCGCCGGc -3'
miRNA:   3'- -GCG-GCCGG---------UGCGa----ACC-CU---CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 133708 0.67 0.46256
Target:  5'- cCGCgCGGCCgcggcguacGCGCggcggUGGcGGaguGGCGCCGGc -3'
miRNA:   3'- -GCG-GCCGG---------UGCGa----ACC-CU---CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 132109 0.72 0.222468
Target:  5'- aCGCUGGUCGCGCU----GGGUGCCGAc -3'
miRNA:   3'- -GCGGCCGGUGCGAacccUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 131403 0.95 0.00577
Target:  5'- cCGCCGGCCACGC-UGGuGAGGCGCCGAu -3'
miRNA:   3'- -GCGGCCGGUGCGaACC-CUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 128689 0.66 0.535105
Target:  5'- cCGCCGGgCACGCgcgcUGGcGAcgcggcuGGCGCgCGu -3'
miRNA:   3'- -GCGGCCgGUGCGa---ACC-CU-------CCGCG-GCu -5'
25506 3' -64 NC_005337.1 + 127894 0.66 0.526615
Target:  5'- gCGCCGGCgaGCGCgugcGGGccgagccGGUGCUGGg -3'
miRNA:   3'- -GCGGCCGg-UGCGaa--CCCu------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 124284 0.66 0.508864
Target:  5'- gCGCCGGCCAgguaaucgaggaagaGCUagccGaGGAGGcCGCCGu -3'
miRNA:   3'- -GCGGCCGGUg--------------CGAa---C-CCUCC-GCGGCu -5'
25506 3' -64 NC_005337.1 + 123957 0.71 0.266841
Target:  5'- aGCCGGUCGCGCUgcacauaGAcgcgaacGGCGCCGAu -3'
miRNA:   3'- gCGGCCGGUGCGAacc----CU-------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 121834 0.68 0.39149
Target:  5'- aCGCCGGCCgACGUgcucgugaagucGGuGGGCGCCa- -3'
miRNA:   3'- -GCGGCCGG-UGCGaa----------CCcUCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 121793 0.69 0.348237
Target:  5'- aCGCCGGUgcggACGC---GGAGGCGCUGGa -3'
miRNA:   3'- -GCGGCCGg---UGCGaacCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 117903 0.67 0.436377
Target:  5'- uGCUgGGCgGCGC-UGGuGcucgaGGGCGCCGAa -3'
miRNA:   3'- gCGG-CCGgUGCGaACC-C-----UCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 117015 0.72 0.238532
Target:  5'- gCGCCaGGCCACGCUccGGGc-GCuGCCGAc -3'
miRNA:   3'- -GCGG-CCGGUGCGAa-CCCucCG-CGGCU- -5'
25506 3' -64 NC_005337.1 + 115427 0.7 0.292567
Target:  5'- uCGCCGGCCGuccgggaguCGCUgGGGuuccuGGUGUCGGc -3'
miRNA:   3'- -GCGGCCGGU---------GCGAaCCCu----CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 109176 0.71 0.273559
Target:  5'- gCGCCGcGCCGCGCggGcGGAgcucGGCGUCGc -3'
miRNA:   3'- -GCGGC-CGGUGCGaaC-CCU----CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 107066 0.7 0.319494
Target:  5'- gCGgCGGCgGCGCgccaGGGGGUGCCGc -3'
miRNA:   3'- -GCgGCCGgUGCGaac-CCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 105056 0.66 0.502387
Target:  5'- aCGcCCGGCCGCGCggcgcUGcgcagcgccuccuucGGcacGGGCGCCGc -3'
miRNA:   3'- -GC-GGCCGGUGCGa----AC---------------CC---UCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 103960 0.66 0.498703
Target:  5'- uCGUCGaUCugGUggagaaggGGGAGGUGCCGGc -3'
miRNA:   3'- -GCGGCcGGugCGaa------CCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 100240 0.66 0.545545
Target:  5'- uCGaCGGCaa-GCUcgUGGaGGGCGCCGAg -3'
miRNA:   3'- -GCgGCCGgugCGA--ACCcUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 99743 0.75 0.148014
Target:  5'- cCGCCGGCUACGCgaGGcGGGCGCg-- -3'
miRNA:   3'- -GCGGCCGGUGCGaaCCcUCCGCGgcu -5'
25506 3' -64 NC_005337.1 + 98928 0.68 0.410241
Target:  5'- aGCCGgcuccacuucggcGCCACGCacgccUGGGuccgcGGCGCCGu -3'
miRNA:   3'- gCGGC-------------CGGUGCGa----ACCCu----CCGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.