miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 95300 0.68 0.402837
Target:  5'- gGCCGGUgacgCACGCgcacucGGGCGCCGAu -3'
miRNA:   3'- gCGGCCG----GUGCGaaccc-UCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 44103 0.7 0.326509
Target:  5'- -cCCGGCCugGCa-GGGAucagcgucGGCGUCGAg -3'
miRNA:   3'- gcGGCCGGugCGaaCCCU--------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 121793 0.69 0.348237
Target:  5'- aCGCCGGUgcggACGC---GGAGGCGCUGGa -3'
miRNA:   3'- -GCGGCCGg---UGCGaacCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 6600 0.69 0.355705
Target:  5'- gCGCCaGGUCgGCGCccaucUGGauGAGGCGCCGGc -3'
miRNA:   3'- -GCGG-CCGG-UGCGa----ACC--CUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 1127 0.69 0.361
Target:  5'- aGCCGcaGCaCGCGCgcgaccagcuccgcgGGGAGcGCGCCGGc -3'
miRNA:   3'- gCGGC--CG-GUGCGaa-------------CCCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 66080 0.69 0.363286
Target:  5'- aCG-CGGCCGCgGCggcGGAGGCGCUGu -3'
miRNA:   3'- -GCgGCCGGUG-CGaacCCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 42538 0.69 0.370978
Target:  5'- cCGCCGGaCGCGCUgc--GGGCGCUGGu -3'
miRNA:   3'- -GCGGCCgGUGCGAacccUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 121834 0.68 0.39149
Target:  5'- aCGCCGGCCgACGUgcucgugaagucGGuGGGCGCCa- -3'
miRNA:   3'- -GCGGCCGG-UGCGaa----------CCcUCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 83901 0.68 0.394711
Target:  5'- cCGCCGGgUACGg--GGGcGGCGCCu- -3'
miRNA:   3'- -GCGGCCgGUGCgaaCCCuCCGCGGcu -5'
25506 3' -64 NC_005337.1 + 77782 0.7 0.326509
Target:  5'- aCGUgGGCCACGaaCUUGGcGAuauccuGGCGCCGc -3'
miRNA:   3'- -GCGgCCGGUGC--GAACC-CU------CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 40109 0.7 0.313277
Target:  5'- uCGUCGGCaa-GCgguucuccgucgugGGGAGGCGCCGc -3'
miRNA:   3'- -GCGGCCGgugCGaa------------CCCUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 20770 0.7 0.312591
Target:  5'- gGCCgcGGCCACGCgcuucgcgGGGAcgGGCguGCCGGa -3'
miRNA:   3'- gCGG--CCGGUGCGaa------CCCU--CCG--CGGCU- -5'
25506 3' -64 NC_005337.1 + 48318 0.72 0.244098
Target:  5'- uGCgCGGgCGCGCUgacGGGcaugagccGGGCGCCGGu -3'
miRNA:   3'- gCG-GCCgGUGCGAa--CCC--------UCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 64922 0.71 0.261445
Target:  5'- gGCCGGCC-CGCgcGGGAaagcGcGCGCCGu -3'
miRNA:   3'- gCGGCCGGuGCGaaCCCU----C-CGCGGCu -5'
25506 3' -64 NC_005337.1 + 123957 0.71 0.266841
Target:  5'- aGCCGGUCGCGCUgcacauaGAcgcgaacGGCGCCGAu -3'
miRNA:   3'- gCGGCCGGUGCGAacc----CU-------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 109176 0.71 0.273559
Target:  5'- gCGCCGcGCCGCGCggGcGGAgcucGGCGUCGc -3'
miRNA:   3'- -GCGGC-CGGUGCGaaC-CCU----CCGCGGCu -5'
25506 3' -64 NC_005337.1 + 98023 0.71 0.279783
Target:  5'- gCGCUGGCCACcgacggGCUgggguucguccGGGAGcGCGCCGc -3'
miRNA:   3'- -GCGGCCGGUG------CGAa----------CCCUC-CGCGGCu -5'
25506 3' -64 NC_005337.1 + 88036 0.7 0.299129
Target:  5'- uGCCGGCgCACGUgcacgGGGucGUGCUGGa -3'
miRNA:   3'- gCGGCCG-GUGCGaa---CCCucCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 60949 0.7 0.305803
Target:  5'- gCGCCGGCaUGCGCaUGGGGcGcGCGCCc- -3'
miRNA:   3'- -GCGGCCG-GUGCGaACCCU-C-CGCGGcu -5'
25506 3' -64 NC_005337.1 + 68247 0.7 0.305803
Target:  5'- aGCgCGGCCgGCGCgUGGGcGaGCGUCGAg -3'
miRNA:   3'- gCG-GCCGG-UGCGaACCCuC-CGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.