miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 6021 0.66 0.686705
Target:  5'- aGCgGCGuccgcccagaguuGUCGCGGgCGUGGAuGUcCGCg -3'
miRNA:   3'- cCGgCGC-------------CAGCGCCaGCGCCU-CA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 86462 0.66 0.687665
Target:  5'- aGGCCG-GcGUCGaaG-CGCgaGGGGUCGCa -3'
miRNA:   3'- -CCGGCgC-CAGCgcCaGCG--CCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 39191 0.66 0.65775
Target:  5'- aGGCCGUcGcCGCGGgcuaCGCGGAcccggacccgggcGUgCGCg -3'
miRNA:   3'- -CCGGCGcCaGCGCCa---GCGCCU-------------CA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 11473 0.66 0.639313
Target:  5'- cGCUGCGGUCGaUGGcCGCGcGcAGcaaCGCg -3'
miRNA:   3'- cCGGCGCCAGC-GCCaGCGC-C-UCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 1668 0.66 0.639313
Target:  5'- uGGCCGCcGcCGCGucGUUGCGGugcccGGUgGCg -3'
miRNA:   3'- -CCGGCGcCaGCGC--CAGCGCC-----UCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 40047 0.66 0.638341
Target:  5'- cGUCGCGGUgCGCcgaaccggggaccGGUaccgCGCGGAGU-GCa -3'
miRNA:   3'- cCGGCGCCA-GCG-------------CCA----GCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 73460 0.66 0.638341
Target:  5'- cGCgGCGGUgcCGCGuGccCGCGGAggaccccaagcucGUCGCg -3'
miRNA:   3'- cCGgCGCCA--GCGC-Ca-GCGCCU-------------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 132272 0.66 0.648051
Target:  5'- uGGCCGUGcugcUGCGGUCGUccgacgcgacgcuGGAGcUCGUc -3'
miRNA:   3'- -CCGGCGCca--GCGCCAGCG-------------CCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 41603 0.66 0.678047
Target:  5'- aGGgCGUGGUCGUGG-CGaaGGAGgcCGUg -3'
miRNA:   3'- -CCgGCGCCAGCGCCaGCg-CCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 1336 0.66 0.649021
Target:  5'- aGGCCGCGG-CgGCGGUaguugaacucCGCGc--UCGCg -3'
miRNA:   3'- -CCGGCGCCaG-CGCCA----------GCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 105168 0.67 0.610182
Target:  5'- cGCUGCacGG-CGUGGucgaccccugcuUCGCGGGGUcCGCg -3'
miRNA:   3'- cCGGCG--CCaGCGCC------------AGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 76868 0.67 0.590825
Target:  5'- aGGCCGCGuG-CGCGcUCGUcaugcuauuuggGGuGUCGCc -3'
miRNA:   3'- -CCGGCGC-CaGCGCcAGCG------------CCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 113141 0.67 0.590825
Target:  5'- cGCUGCGGUaCGUGcuguUCGCGGuG-CGCu -3'
miRNA:   3'- cCGGCGCCA-GCGCc---AGCGCCuCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 122055 0.67 0.600493
Target:  5'- uGCCGC-GUCGUGGagacgcugccCGCGGAggugucGUCGCu -3'
miRNA:   3'- cCGGCGcCAGCGCCa---------GCGCCU------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10836 0.67 0.590825
Target:  5'- cGCUGCGG-CGCGGagggcgagacaUUGCaGAGcUCGCu -3'
miRNA:   3'- cCGGCGCCaGCGCC-----------AGCGcCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 30759 0.67 0.610182
Target:  5'- gGGCgGCaGcgUGCGGaagCGCugcacGGAGUCGCa -3'
miRNA:   3'- -CCGgCGcCa-GCGCCa--GCG-----CCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 22647 0.67 0.600493
Target:  5'- aGGCCuucggcGCGGacgCGCGGcUGCGgGAG-CGCu -3'
miRNA:   3'- -CCGG------CGCCa--GCGCCaGCGC-CUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 58353 0.67 0.610182
Target:  5'- -aCCGUGGcCGCGcucuUCGCGGAcuUCGCg -3'
miRNA:   3'- ccGGCGCCaGCGCc---AGCGCCUc-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 36227 0.67 0.599525
Target:  5'- cGGCCGCGG-CGCGcUCcCGGAcgaaccccagcccGUCGg -3'
miRNA:   3'- -CCGGCGCCaGCGCcAGcGCCU-------------CAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.