miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 109093 0.66 0.668396
Target:  5'- uGGCCGCGGcCGaggccaGGgccacacagagCGCGGAcacCGCg -3'
miRNA:   3'- -CCGGCGCCaGCg-----CCa----------GCGCCUca-GCG- -5'
25507 5' -62.1 NC_005337.1 + 42740 0.66 0.639313
Target:  5'- cGGCCGCGccgagcgUGCGGU-GCGG-GUccCGCg -3'
miRNA:   3'- -CCGGCGCca-----GCGCCAgCGCCuCA--GCG- -5'
25507 5' -62.1 NC_005337.1 + 40047 0.66 0.638341
Target:  5'- cGUCGCGGUgCGCcgaaccggggaccGGUaccgCGCGGAGU-GCa -3'
miRNA:   3'- cCGGCGCCA-GCG-------------CCA----GCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 29691 0.66 0.629598
Target:  5'- gGGCCGCgaagGGcUCGUccGUCuCGGGGUCGUa -3'
miRNA:   3'- -CCGGCG----CC-AGCGc-CAGcGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 1668 0.66 0.639313
Target:  5'- uGGCCGCcGcCGCGucGUUGCGGugcccGGUgGCg -3'
miRNA:   3'- -CCGGCGcCaGCGC--CAGCGCC-----UCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 1336 0.66 0.649021
Target:  5'- aGGCCGCGG-CgGCGGUaguugaacucCGCGc--UCGCg -3'
miRNA:   3'- -CCGGCGCCaG-CGCCA----------GCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 95305 0.66 0.658719
Target:  5'- aGGCgCGCGGcgCGCuGUUGCGcucGUCGUc -3'
miRNA:   3'- -CCG-GCGCCa-GCGcCAGCGCcu-CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10519 0.66 0.639313
Target:  5'- cGGCCacguugcCGGUgGCGGa-GCGGAGcaCGCg -3'
miRNA:   3'- -CCGGc------GCCAgCGCCagCGCCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 17015 0.66 0.687665
Target:  5'- cGUCGgGGUCuGCGGgccgCGCGaAGgCGCa -3'
miRNA:   3'- cCGGCgCCAG-CGCCa---GCGCcUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 71496 0.66 0.687665
Target:  5'- cGGaCGCGGugcccgacuUCGCGuuccaccgccgcGUCGCGGAgcugGUCGUg -3'
miRNA:   3'- -CCgGCGCC---------AGCGC------------CAGCGCCU----CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 35251 0.66 0.687665
Target:  5'- uGGCCcUGGUCugGCuGGUCGacagGGAG-CGCg -3'
miRNA:   3'- -CCGGcGCCAG--CG-CCAGCg---CCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 121880 0.66 0.648051
Target:  5'- cGCUGCGGcuguugcUCGCGGcaaGCGaGGGaaUCGCg -3'
miRNA:   3'- cCGGCGCC-------AGCGCCag-CGC-CUC--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 11473 0.66 0.639313
Target:  5'- cGCUGCGGUCGaUGGcCGCGcGcAGcaaCGCg -3'
miRNA:   3'- cCGGCGCCAGC-GCCaGCGC-C-UCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 73460 0.66 0.638341
Target:  5'- cGCgGCGGUgcCGCGuGccCGCGGAggaccccaagcucGUCGCg -3'
miRNA:   3'- cCGgCGCCA--GCGC-Ca-GCGCCU-------------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 8000 0.66 0.629598
Target:  5'- -uCUGCGcGUgCGUGGcuaUCGCGGcGUCGCu -3'
miRNA:   3'- ccGGCGC-CA-GCGCC---AGCGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 926 0.66 0.629598
Target:  5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3'
miRNA:   3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 42139 0.66 0.668396
Target:  5'- uGGcCCGCGG-CGC-GUC-CGGGGUCu- -3'
miRNA:   3'- -CC-GGCGCCaGCGcCAGcGCCUCAGcg -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 36102 0.66 0.649021
Target:  5'- cGCCGacgauggaGGUcaCGCGGUCGuCGGGGaaggcCGCc -3'
miRNA:   3'- cCGGCg-------CCA--GCGCCAGC-GCCUCa----GCG- -5'
25507 5' -62.1 NC_005337.1 + 50374 0.66 0.649021
Target:  5'- gGGCC-CGGgcacgggCGCcuGG-CGCGGGGgCGCg -3'
miRNA:   3'- -CCGGcGCCa------GCG--CCaGCGCCUCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.