miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 3264 0.66 0.674191
Target:  5'- cGuuGCGGUgCGCGGcggccacgugcaGCGGcGUCGUg -3'
miRNA:   3'- cCggCGCCA-GCGCCag----------CGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 3648 0.68 0.550581
Target:  5'- cGCCGCGGccucgucguccgCGCaGUCGgGGGucuugcGUCGCg -3'
miRNA:   3'- cCGGCGCCa-----------GCGcCAGCgCCU------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 3792 0.67 0.610182
Target:  5'- cGCUGaaGUCGCGGuugaguacguacUCGCGGAGgagGCu -3'
miRNA:   3'- cCGGCgcCAGCGCC------------AGCGCCUCag-CG- -5'
25507 5' -62.1 NC_005337.1 + 4579 0.66 0.658719
Target:  5'- uGCCGCGGgCGCGGcgacugCGCgugcuggugcaGGAG-CGUg -3'
miRNA:   3'- cCGGCGCCaGCGCCa-----GCG-----------CCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 5426 0.73 0.271339
Target:  5'- cGGCCGUGGUcaggcagaggagcaCGCGGUCGagcaucucCGGGGgcagggCGCa -3'
miRNA:   3'- -CCGGCGCCA--------------GCGCCAGC--------GCCUCa-----GCG- -5'
25507 5' -62.1 NC_005337.1 + 6021 0.66 0.686705
Target:  5'- aGCgGCGuccgcccagaguuGUCGCGGgCGUGGAuGUcCGCg -3'
miRNA:   3'- cCGgCGC-------------CAGCGCCaGCGCCU-CA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 7039 0.7 0.433854
Target:  5'- aGGCCGagcacguCGGg-GCGGgcgGCGGGGUUGCg -3'
miRNA:   3'- -CCGGC-------GCCagCGCCag-CGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 8000 0.66 0.629598
Target:  5'- -uCUGCGcGUgCGUGGcuaUCGCGGcGUCGCu -3'
miRNA:   3'- ccGGCGC-CA-GCGCC---AGCGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 8282 0.68 0.524218
Target:  5'- cGGCCGCGa-CGUGca-GCGGGGUCuGCa -3'
miRNA:   3'- -CCGGCGCcaGCGCcagCGCCUCAG-CG- -5'
25507 5' -62.1 NC_005337.1 + 8890 0.67 0.619886
Target:  5'- gGGCCGCGccacaggCGCGGcCGCGucuacaGAGUCu- -3'
miRNA:   3'- -CCGGCGCca-----GCGCCaGCGC------CUCAGcg -5'
25507 5' -62.1 NC_005337.1 + 9170 0.69 0.474855
Target:  5'- uGCCGgagacccCGGUcaggugcuuggccaCGCGGUCGCGGAcccagaaccgGUCGUa -3'
miRNA:   3'- cCGGC-------GCCA--------------GCGCCAGCGCCU----------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10235 0.78 0.144781
Target:  5'- aGCCGCGGcaggcgCGCGGccuUCGCGGGG-CGCc -3'
miRNA:   3'- cCGGCGCCa-----GCGCC---AGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 10519 0.66 0.639313
Target:  5'- cGGCCacguugcCGGUgGCGGa-GCGGAGcaCGCg -3'
miRNA:   3'- -CCGGc------GCCAgCGCCagCGCCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 10606 0.7 0.443268
Target:  5'- cGCCGCGGgggaGCGGcggCGCcaGGAcgaccGUCGCg -3'
miRNA:   3'- cCGGCGCCag--CGCCa--GCG--CCU-----CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10836 0.67 0.590825
Target:  5'- cGCUGCGG-CGCGGagggcgagacaUUGCaGAGcUCGCu -3'
miRNA:   3'- cCGGCGCCaGCGCC-----------AGCGcCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 11329 0.66 0.668396
Target:  5'- uGGCgGCGucGUCGCGGcCGgGGAuggagaagaGcCGCg -3'
miRNA:   3'- -CCGgCGC--CAGCGCCaGCgCCU---------CaGCG- -5'
25507 5' -62.1 NC_005337.1 + 11473 0.66 0.639313
Target:  5'- cGCUGCGGUCGaUGGcCGCGcGcAGcaaCGCg -3'
miRNA:   3'- cCGGCGCCAGC-GCCaGCGC-C-UCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 12144 0.72 0.325726
Target:  5'- uGGUCGCGGacUCGaCGaUCGCGGAGaaGCa -3'
miRNA:   3'- -CCGGCGCC--AGC-GCcAGCGCCUCagCG- -5'
25507 5' -62.1 NC_005337.1 + 12267 0.7 0.443268
Target:  5'- cGUCGCGGcCG-GGUCGCaccccgcgcgcaGGAGcUCGCg -3'
miRNA:   3'- cCGGCGCCaGCgCCAGCG------------CCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 12351 0.67 0.571576
Target:  5'- cGCCGUccGUcCGCGGacgUCGCGGcgcGUCGCg -3'
miRNA:   3'- cCGGCGc-CA-GCGCC---AGCGCCu--CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.