miRNA display CGI


Results 1 - 20 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 564 0.74 0.261143
Target:  5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3'
miRNA:   3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 564 0.74 0.261143
Target:  5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3'
miRNA:   3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 854 0.7 0.409604
Target:  5'- aGGCgGCGGgcagCGCGGgCGCGGccgggcggaagAG-CGCg -3'
miRNA:   3'- -CCGgCGCCa---GCGCCaGCGCC-----------UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 854 0.7 0.409604
Target:  5'- aGGCgGCGGgcagCGCGGgCGCGGccgggcggaagAG-CGCg -3'
miRNA:   3'- -CCGgCGCCa---GCGCCaGCGCC-----------UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 926 0.66 0.629598
Target:  5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3'
miRNA:   3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 926 0.66 0.629598
Target:  5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3'
miRNA:   3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 977 0.72 0.332799
Target:  5'- aGCgGCGGggcuggCGCGGcgCGCGGAgggcgggcGUCGCc -3'
miRNA:   3'- cCGgCGCCa-----GCGCCa-GCGCCU--------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 977 0.72 0.332799
Target:  5'- aGCgGCGGggcuggCGCGGcgCGCGGAgggcgggcGUCGCc -3'
miRNA:   3'- cCGgCGCCa-----GCGCCa-GCGCCU--------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 1278 0.69 0.496525
Target:  5'- uGGcCCGCGGagGCgGGUCGgCGGgcaGGUUGUc -3'
miRNA:   3'- -CC-GGCGCCagCG-CCAGC-GCC---UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 1336 0.66 0.649021
Target:  5'- aGGCCGCGG-CgGCGGUaguugaacucCGCGc--UCGCg -3'
miRNA:   3'- -CCGGCGCCaG-CGCCA----------GCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 1668 0.66 0.639313
Target:  5'- uGGCCGCcGcCGCGucGUUGCGGugcccGGUgGCg -3'
miRNA:   3'- -CCGGCGcCaGCGC--CAGCGCC-----UCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 2128 0.67 0.62377
Target:  5'- uGGCaGCGGuucagcaccaccagcUCGCaGUUGCGGAGccugccgCGCa -3'
miRNA:   3'- -CCGgCGCC---------------AGCGcCAGCGCCUCa------GCG- -5'
25507 5' -62.1 NC_005337.1 + 2198 0.74 0.24955
Target:  5'- aGGCgGCGGaCGCGGgCGCGGcccgGGcCGCg -3'
miRNA:   3'- -CCGgCGCCaGCGCCaGCGCC----UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 2295 0.73 0.279351
Target:  5'- aGGCUGCGG-CGgGGUCG-GGAG-CGUc -3'
miRNA:   3'- -CCGGCGCCaGCgCCAGCgCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 2408 0.7 0.417871
Target:  5'- cGGaaGCGGUCGCa--CGUGGAG-CGCg -3'
miRNA:   3'- -CCggCGCCAGCGccaGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 2410 0.67 0.610182
Target:  5'- aGGCaGCGGacgaccUCGgGGUCGgGGccGUCGUa -3'
miRNA:   3'- -CCGgCGCC------AGCgCCAGCgCCu-CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 2697 0.73 0.279351
Target:  5'- aGCUGCGG-CGUGGggaCGCGGAGgagcacgagCGCg -3'
miRNA:   3'- cCGGCGCCaGCGCCa--GCGCCUCa--------GCG- -5'
25507 5' -62.1 NC_005337.1 + 2831 0.69 0.48744
Target:  5'- aGGCCgagcGCGGccucCGCGGagacggagucCGCGGAGcCGCg -3'
miRNA:   3'- -CCGG----CGCCa---GCGCCa---------GCGCCUCaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.