miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 133713 0.82 0.075696
Target:  5'- cGGCCGCGGcguacgcgCgGCGGUgGCGGAGUgGCg -3'
miRNA:   3'- -CCGGCGCCa-------G-CGCCAgCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 133713 0.82 0.075696
Target:  5'- cGGCCGCGGcguacgcgCgGCGGUgGCGGAGUgGCg -3'
miRNA:   3'- -CCGGCGCCa-------G-CGCCAgCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 133565 0.72 0.347283
Target:  5'- -cCCGCGGcCGCGGgcgugCGCGcGAGcuUCGCc -3'
miRNA:   3'- ccGGCGCCaGCGCCa----GCGC-CUC--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 133565 0.72 0.347283
Target:  5'- -cCCGCGGcCGCGGgcgugCGCGcGAGcuUCGCc -3'
miRNA:   3'- ccGGCGCCaGCGCCa----GCGC-CUC--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 133521 0.72 0.347283
Target:  5'- uGGCCGCcGUCGaGGcCGCGGGcGcCGCg -3'
miRNA:   3'- -CCGGCGcCAGCgCCaGCGCCU-CaGCG- -5'
25507 5' -62.1 NC_005337.1 + 133521 0.72 0.347283
Target:  5'- uGGCCGCcGUCGaGGcCGCGGGcGcCGCg -3'
miRNA:   3'- -CCGGCGcCAGCgCCaGCGCCU-CaGCG- -5'
25507 5' -62.1 NC_005337.1 + 133118 0.67 0.610182
Target:  5'- gGGCCGCuccgccGG-CGCGcucccCGCGGAgcugGUCGCg -3'
miRNA:   3'- -CCGGCG------CCaGCGCca---GCGCCU----CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 132714 0.68 0.524218
Target:  5'- gGGCCGCGccaugcgCGCGGUaucaaGCGG--UCGCc -3'
miRNA:   3'- -CCGGCGCca-----GCGCCAg----CGCCucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 132548 0.72 0.331376
Target:  5'- uGGCCGCGGUgGuuGUCGuCGGcacgguggccguGUCGCu -3'
miRNA:   3'- -CCGGCGCCAgCgcCAGC-GCCu-----------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 132272 0.66 0.648051
Target:  5'- uGGCCGUGcugcUGCGGUCGUccgacgcgacgcuGGAGcUCGUc -3'
miRNA:   3'- -CCGGCGCca--GCGCCAGCG-------------CCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 131420 0.71 0.40144
Target:  5'- uGGCgCGCGGcucCGCGGacuccgucucCGCGGAGgccgCGCu -3'
miRNA:   3'- -CCG-GCGCCa--GCGCCa---------GCGCCUCa---GCG- -5'
25507 5' -62.1 NC_005337.1 + 131194 0.71 0.362211
Target:  5'- uGGCCGUcGcCGaGGUgCGCGGAGUcCGCg -3'
miRNA:   3'- -CCGGCGcCaGCgCCA-GCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 131167 1.12 0.000535
Target:  5'- cGGCCGCGGUCGCGGUCGCGGAGUCGCu -3'
miRNA:   3'- -CCGGCGCCAGCGCCAGCGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 130175 0.69 0.478434
Target:  5'- aGGCCGUGcG-CGCGGagcaCGCGGAGcUCa- -3'
miRNA:   3'- -CCGGCGC-CaGCGCCa---GCGCCUC-AGcg -5'
25507 5' -62.1 NC_005337.1 + 128489 0.7 0.434705
Target:  5'- uGCuCGCGGgCGUGcGUCGCGuacguGGUCGCg -3'
miRNA:   3'- cCG-GCGCCaGCGC-CAGCGCc----UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 128220 0.66 0.649021
Target:  5'- cGCuCGUGGcCGCGGgCGCGGAcauccaCGCc -3'
miRNA:   3'- cCG-GCGCCaGCGCCaGCGCCUca----GCG- -5'
25507 5' -62.1 NC_005337.1 + 127912 0.68 0.55248
Target:  5'- gGGCCGagcCGGUgcugggcaaguaCGCGGaCGCGGuG-CGCg -3'
miRNA:   3'- -CCGGC---GCCA------------GCGCCaGCGCCuCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 127569 0.68 0.543004
Target:  5'- cGGCUGCugcuGGagGCGGgcgcagcCGUGGAcGUCGCc -3'
miRNA:   3'- -CCGGCG----CCagCGCCa------GCGCCU-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.