miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 12144 0.72 0.325726
Target:  5'- uGGUCGCGGacUCGaCGaUCGCGGAGaaGCa -3'
miRNA:   3'- -CCGGCGCC--AGC-GCcAGCGCCUCagCG- -5'
25507 5' -62.1 NC_005337.1 + 564 0.74 0.261143
Target:  5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3'
miRNA:   3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 21071 0.74 0.267103
Target:  5'- cGCCGUaGUCGUGGUCcCGGAcGUCGUc -3'
miRNA:   3'- cCGGCGcCAGCGCCAGcGCCU-CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 2697 0.73 0.279351
Target:  5'- aGCUGCGG-CGUGGggaCGCGGAGgagcacgagCGCg -3'
miRNA:   3'- cCGGCGCCaGCGCCa--GCGCCUCa--------GCG- -5'
25507 5' -62.1 NC_005337.1 + 110360 0.73 0.279351
Target:  5'- uGCCGCGGgcgCGCGGgcgCGCGGcAG-CGa -3'
miRNA:   3'- cCGGCGCCa--GCGCCa--GCGCC-UCaGCg -5'
25507 5' -62.1 NC_005337.1 + 20769 0.73 0.285641
Target:  5'- gGGCCGCGGccaCGCGcuUCGCGGGGaCGg -3'
miRNA:   3'- -CCGGCGCCa--GCGCc-AGCGCCUCaGCg -5'
25507 5' -62.1 NC_005337.1 + 52021 0.73 0.285641
Target:  5'- cGGCCGCGcGcgCGCGGUCaUGGAGUUcCg -3'
miRNA:   3'- -CCGGCGC-Ca-GCGCCAGcGCCUCAGcG- -5'
25507 5' -62.1 NC_005337.1 + 66077 0.73 0.298554
Target:  5'- cGGaCGCGGcCGCGG-CgGCGGAGgCGCu -3'
miRNA:   3'- -CCgGCGCCaGCGCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 19404 0.73 0.304511
Target:  5'- gGGCCGaaggcgccgauguCGGagaCGCGGUCGCGGAGguaGUc -3'
miRNA:   3'- -CCGGC-------------GCCa--GCGCCAGCGCCUCag-CG- -5'
25507 5' -62.1 NC_005337.1 + 36495 0.74 0.255292
Target:  5'- uGGCCGCGGcCGCGG-CGCucGG-CGCg -3'
miRNA:   3'- -CCGGCGCCaGCGCCaGCGccUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 21404 0.75 0.235117
Target:  5'- cGGCCGCggcaucgucgacgugGGcCGCGGccagcUCGCGGAGcuUCGCc -3'
miRNA:   3'- -CCGGCG---------------CCaGCGCC-----AGCGCCUC--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 84892 0.81 0.09035
Target:  5'- cGGCCGCGGgggGCGGU-GCGGcGGUCGCc -3'
miRNA:   3'- -CCGGCGCCag-CGCCAgCGCC-UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 68107 0.77 0.155738
Target:  5'- cGGCgGUGGUCGUacucggGGUCGCGGGGcCGg -3'
miRNA:   3'- -CCGgCGCCAGCG------CCAGCGCCUCaGCg -5'
25507 5' -62.1 NC_005337.1 + 110215 0.77 0.163454
Target:  5'- cGGCCGCGGcCGCGGcCGCG---UCGCc -3'
miRNA:   3'- -CCGGCGCCaGCGCCaGCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 28500 0.77 0.171512
Target:  5'- cGGCgCGCGGUCGCGcGgcacugCGUGGGGcaggCGCa -3'
miRNA:   3'- -CCG-GCGCCAGCGC-Ca-----GCGCCUCa---GCG- -5'
25507 5' -62.1 NC_005337.1 + 77759 0.76 0.175672
Target:  5'- aGGCCGUcuuGG-CGCGGUCGCGGAcGUgGg -3'
miRNA:   3'- -CCGGCG---CCaGCGCCAGCGCCU-CAgCg -5'
25507 5' -62.1 NC_005337.1 + 88944 0.76 0.197847
Target:  5'- aGCuCGCGGaccgCGCGGagGCGGAGggCGCg -3'
miRNA:   3'- cCG-GCGCCa---GCGCCagCGCCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 97997 0.76 0.202565
Target:  5'- uGGCCGCGuUCGCGca-GCGGcuGGUCGCg -3'
miRNA:   3'- -CCGGCGCcAGCGCcagCGCC--UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 74571 0.75 0.222423
Target:  5'- uGGCCGCGcGgcaCGCGGaCGCGcuGUCGCg -3'
miRNA:   3'- -CCGGCGC-Ca--GCGCCaGCGCcuCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.