miRNA display CGI


Results 1 - 20 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 131167 1.12 0.000535
Target:  5'- cGGCCGCGGUCGCGGUCGCGGAGUCGCu -3'
miRNA:   3'- -CCGGCGCCAGCGCCAGCGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 977 0.72 0.332799
Target:  5'- aGCgGCGGggcuggCGCGGcgCGCGGAgggcgggcGUCGCc -3'
miRNA:   3'- cCGgCGCCa-----GCGCCa-GCGCCU--------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 86704 0.72 0.339985
Target:  5'- cGGCUGCGGcUCGuCGG-CgGUGGucAGUCGCg -3'
miRNA:   3'- -CCGGCGCC-AGC-GCCaG-CGCC--UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 86462 0.66 0.687665
Target:  5'- aGGCCG-GcGUCGaaG-CGCgaGGGGUCGCa -3'
miRNA:   3'- -CCGGCgC-CAGCgcCaGCG--CCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 116608 0.77 0.155738
Target:  5'- cGCCGCGGU-GCGGcgCGUGGAcguGUCGCc -3'
miRNA:   3'- cCGGCGCCAgCGCCa-GCGCCU---CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 114122 0.76 0.193225
Target:  5'- cGCCGCGGcCuGCGGcagCGUGGAG-CGCg -3'
miRNA:   3'- cCGGCGCCaG-CGCCa--GCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 126204 0.76 0.197847
Target:  5'- cGUCGCGcGuccUCGCGGUCGCGGAGgagGCc -3'
miRNA:   3'- cCGGCGC-C---AGCGCCAGCGCCUCag-CG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 2198 0.74 0.24955
Target:  5'- aGGCgGCGGaCGCGGgCGCGGcccgGGcCGCg -3'
miRNA:   3'- -CCGgCGCCaGCGCCaGCGCC----UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 2295 0.73 0.279351
Target:  5'- aGGCUGCGG-CGgGGUCG-GGAG-CGUc -3'
miRNA:   3'- -CCGGCGCCaGCgCCAGCgCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 564 0.74 0.261143
Target:  5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3'
miRNA:   3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 25393 0.75 0.23296
Target:  5'- cGCCGCGGUgGCGGcCuCGGAGuucggguuccgcUCGCa -3'
miRNA:   3'- cCGGCGCCAgCGCCaGcGCCUC------------AGCG- -5'
25507 5' -62.1 NC_005337.1 + 66319 0.86 0.040275
Target:  5'- cGCCGCGGUCGCGGgcuggcgacacgugcUCGUGGAG-CGCg -3'
miRNA:   3'- cCGGCGCCAGCGCC---------------AGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 5426 0.73 0.271339
Target:  5'- cGGCCGUGGUcaggcagaggagcaCGCGGUCGagcaucucCGGGGgcagggCGCa -3'
miRNA:   3'- -CCGGCGCCA--------------GCGCCAGC--------GCCUCa-----GCG- -5'
25507 5' -62.1 NC_005337.1 + 133713 0.82 0.075696
Target:  5'- cGGCCGCGGcguacgcgCgGCGGUgGCGGAGUgGCg -3'
miRNA:   3'- -CCGGCGCCa-------G-CGCCAgCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 91197 0.75 0.229755
Target:  5'- uGGCCGCGGuggacauccgacaguUCGUGGUCGUGG---CGCa -3'
miRNA:   3'- -CCGGCGCC---------------AGCGCCAGCGCCucaGCG- -5'
25507 5' -62.1 NC_005337.1 + 30644 0.73 0.273172
Target:  5'- aGCCGaggauGGcgCGCGG-CGCGGAGUUGUg -3'
miRNA:   3'- cCGGCg----CCa-GCGCCaGCGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 37405 0.72 0.332799
Target:  5'- cGCCGCGcauccgCGCGGagUCGCGGAGcCGg -3'
miRNA:   3'- cCGGCGCca----GCGCC--AGCGCCUCaGCg -5'
25507 5' -62.1 NC_005337.1 + 10235 0.78 0.144781
Target:  5'- aGCCGCGGcaggcgCGCGGccuUCGCGGGG-CGCc -3'
miRNA:   3'- cCGGCGCCa-----GCGCC---AGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 91883 0.76 0.197847
Target:  5'- aGGCCGCGcGcCGCGG-CGCcuccGGGUCGCc -3'
miRNA:   3'- -CCGGCGC-CaGCGCCaGCGc---CUCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.