miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 131167 1.12 0.000535
Target:  5'- cGGCCGCGGUCGCGGUCGCGGAGUCGCu -3'
miRNA:   3'- -CCGGCGCCAGCGCCAGCGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 66319 0.86 0.040275
Target:  5'- cGCCGCGGUCGCGGgcuggcgacacgugcUCGUGGAG-CGCg -3'
miRNA:   3'- cCGGCGCCAGCGCC---------------AGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 133713 0.82 0.075696
Target:  5'- cGGCCGCGGcguacgcgCgGCGGUgGCGGAGUgGCg -3'
miRNA:   3'- -CCGGCGCCa-------G-CGCCAgCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 133713 0.82 0.075696
Target:  5'- cGGCCGCGGcguacgcgCgGCGGUgGCGGAGUgGCg -3'
miRNA:   3'- -CCGGCGCCa-------G-CGCCAgCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 84892 0.81 0.09035
Target:  5'- cGGCCGCGGgggGCGGU-GCGGcGGUCGCc -3'
miRNA:   3'- -CCGGCGCCag-CGCCAgCGCC-UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10235 0.78 0.144781
Target:  5'- aGCCGCGGcaggcgCGCGGccuUCGCGGGG-CGCc -3'
miRNA:   3'- cCGGCGCCa-----GCGCC---AGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 116608 0.77 0.155738
Target:  5'- cGCCGCGGU-GCGGcgCGUGGAcguGUCGCc -3'
miRNA:   3'- cCGGCGCCAgCGCCa-GCGCCU---CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 68107 0.77 0.155738
Target:  5'- cGGCgGUGGUCGUacucggGGUCGCGGGGcCGg -3'
miRNA:   3'- -CCGgCGCCAGCG------CCAGCGCCUCaGCg -5'
25507 5' -62.1 NC_005337.1 + 110215 0.77 0.163454
Target:  5'- cGGCCGCGGcCGCGGcCGCG---UCGCc -3'
miRNA:   3'- -CCGGCGCCaGCGCCaGCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 28500 0.77 0.171512
Target:  5'- cGGCgCGCGGUCGCGcGgcacugCGUGGGGcaggCGCa -3'
miRNA:   3'- -CCG-GCGCCAGCGC-Ca-----GCGCCUCa---GCG- -5'
25507 5' -62.1 NC_005337.1 + 77759 0.76 0.175672
Target:  5'- aGGCCGUcuuGG-CGCGGUCGCGGAcGUgGg -3'
miRNA:   3'- -CCGGCG---CCaGCGCCAGCGCCU-CAgCg -5'
25507 5' -62.1 NC_005337.1 + 114122 0.76 0.193225
Target:  5'- cGCCGCGGcCuGCGGcagCGUGGAG-CGCg -3'
miRNA:   3'- cCGGCGCCaG-CGCCa--GCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 88944 0.76 0.197847
Target:  5'- aGCuCGCGGaccgCGCGGagGCGGAGggCGCg -3'
miRNA:   3'- cCG-GCGCCa---GCGCCagCGCCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 126204 0.76 0.197847
Target:  5'- cGUCGCGcGuccUCGCGGUCGCGGAGgagGCc -3'
miRNA:   3'- cCGGCGC-C---AGCGCCAGCGCCUCag-CG- -5'
25507 5' -62.1 NC_005337.1 + 91883 0.76 0.197847
Target:  5'- aGGCCGCGcGcCGCGG-CGCcuccGGGUCGCc -3'
miRNA:   3'- -CCGGCGC-CaGCGCCaGCGc---CUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 97997 0.76 0.202565
Target:  5'- uGGCCGCGuUCGCGca-GCGGcuGGUCGCg -3'
miRNA:   3'- -CCGGCGCcAGCGCcagCGCC--UCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 74571 0.75 0.222423
Target:  5'- uGGCCGCGcGgcaCGCGGaCGCGcuGUCGCg -3'
miRNA:   3'- -CCGGCGC-Ca--GCGCCaGCGCcuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 725 0.75 0.22764
Target:  5'- cGGCCGCGGgguaCGCGGgcgagagCGCGGcGccCGCg -3'
miRNA:   3'- -CCGGCGCCa---GCGCCa------GCGCCuCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 91197 0.75 0.229755
Target:  5'- uGGCCGCGGuggacauccgacaguUCGUGGUCGUGG---CGCa -3'
miRNA:   3'- -CCGGCGCC---------------AGCGCCAGCGCCucaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.