Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25507 | 5' | -62.1 | NC_005337.1 | + | 74171 | 0.66 | 0.658719 |
Target: 5'- uGCUGCGGgaggCGCGcUCGggccgGGAGUCGg -3' miRNA: 3'- cCGGCGCCa---GCGCcAGCg----CCUCAGCg -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 86462 | 0.66 | 0.687665 |
Target: 5'- aGGCCG-GcGUCGaaG-CGCgaGGGGUCGCa -3' miRNA: 3'- -CCGGCgC-CAGCgcCaGCG--CCUCAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 1668 | 0.66 | 0.639313 |
Target: 5'- uGGCCGCcGcCGCGucGUUGCGGugcccGGUgGCg -3' miRNA: 3'- -CCGGCGcCaGCGC--CAGCGCC-----UCAgCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 73460 | 0.66 | 0.638341 |
Target: 5'- cGCgGCGGUgcCGCGuGccCGCGGAggaccccaagcucGUCGCg -3' miRNA: 3'- cCGgCGCCA--GCGC-Ca-GCGCCU-------------CAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 926 | 0.66 | 0.629598 |
Target: 5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3' miRNA: 3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 117300 | 0.66 | 0.666463 |
Target: 5'- --aCGUGGUCGCGuacgcgaacacCGCGGGGaUCGCc -3' miRNA: 3'- ccgGCGCCAGCGCca---------GCGCCUC-AGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 11329 | 0.66 | 0.668396 |
Target: 5'- uGGCgGCGucGUCGCGGcCGgGGAuggagaagaGcCGCg -3' miRNA: 3'- -CCGgCGC--CAGCGCCaGCgCCU---------CaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 50374 | 0.66 | 0.649021 |
Target: 5'- gGGCC-CGGgcacgggCGCcuGG-CGCGGGGgCGCg -3' miRNA: 3'- -CCGGcGCCa------GCG--CCaGCGCCUCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 11473 | 0.66 | 0.639313 |
Target: 5'- cGCUGCGGUCGaUGGcCGCGcGcAGcaaCGCg -3' miRNA: 3'- cCGGCGCCAGC-GCCaGCGC-C-UCa--GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 128220 | 0.66 | 0.649021 |
Target: 5'- cGCuCGUGGcCGCGGgCGCGGAcauccaCGCc -3' miRNA: 3'- cCG-GCGCCaGCGCCaGCGCCUca----GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 42139 | 0.66 | 0.668396 |
Target: 5'- uGGcCCGCGG-CGC-GUC-CGGGGUCu- -3' miRNA: 3'- -CC-GGCGCCaGCGcCAGcGCCUCAGcg -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 133654 | 0.66 | 0.629598 |
Target: 5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3' miRNA: 3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 36102 | 0.66 | 0.649021 |
Target: 5'- cGCCGacgauggaGGUcaCGCGGUCGuCGGGGaaggcCGCc -3' miRNA: 3'- cCGGCg-------CCA--GCGCCAGC-GCCUCa----GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 68038 | 0.66 | 0.659687 |
Target: 5'- cGCCGaUGGggaCGCGGgacuccauuuacuacCGCGGAGgaaCGCa -3' miRNA: 3'- cCGGC-GCCa--GCGCCa--------------GCGCCUCa--GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 40047 | 0.66 | 0.638341 |
Target: 5'- cGUCGCGGUgCGCcgaaccggggaccGGUaccgCGCGGAGU-GCa -3' miRNA: 3'- cCGGCGCCA-GCG-------------CCA----GCGCCUCAgCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 31250 | 0.66 | 0.668396 |
Target: 5'- aGGUCGCGGcuccggcaGCGGaUGCGGuG-CGCc -3' miRNA: 3'- -CCGGCGCCag------CGCCaGCGCCuCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 42740 | 0.66 | 0.639313 |
Target: 5'- cGGCCGCGccgagcgUGCGGU-GCGG-GUccCGCg -3' miRNA: 3'- -CCGGCGCca-----GCGCCAgCGCCuCA--GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 109093 | 0.66 | 0.668396 |
Target: 5'- uGGCCGCGGcCGaggccaGGgccacacagagCGCGGAcacCGCg -3' miRNA: 3'- -CCGGCGCCaGCg-----CCa----------GCGCCUca-GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 44911 | 0.66 | 0.668396 |
Target: 5'- uGCUGCGGgagaUCGUGGacacguguccgCGCGGA-UCGCu -3' miRNA: 3'- cCGGCGCC----AGCGCCa----------GCGCCUcAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 52128 | 0.66 | 0.658719 |
Target: 5'- cGGCCaUGGccuUCGUGGaCGCGu-GUCGCg -3' miRNA: 3'- -CCGGcGCC---AGCGCCaGCGCcuCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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