miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 1668 0.66 0.639313
Target:  5'- uGGCCGCcGcCGCGucGUUGCGGugcccGGUgGCg -3'
miRNA:   3'- -CCGGCGcCaGCGC--CAGCGCC-----UCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 11473 0.66 0.639313
Target:  5'- cGCUGCGGUCGaUGGcCGCGcGcAGcaaCGCg -3'
miRNA:   3'- cCGGCGCCAGC-GCCaGCGC-C-UCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 10519 0.66 0.639313
Target:  5'- cGGCCacguugcCGGUgGCGGa-GCGGAGcaCGCg -3'
miRNA:   3'- -CCGGc------GCCAgCGCCagCGCCUCa-GCG- -5'
25507 5' -62.1 NC_005337.1 + 40047 0.66 0.638341
Target:  5'- cGUCGCGGUgCGCcgaaccggggaccGGUaccgCGCGGAGU-GCa -3'
miRNA:   3'- cCGGCGCCA-GCG-------------CCA----GCGCCUCAgCG- -5'
25507 5' -62.1 NC_005337.1 + 73460 0.66 0.638341
Target:  5'- cGCgGCGGUgcCGCGuGccCGCGGAggaccccaagcucGUCGCg -3'
miRNA:   3'- cCGgCGCCA--GCGC-Ca-GCGCCU-------------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 8000 0.66 0.629598
Target:  5'- -uCUGCGcGUgCGUGGcuaUCGCGGcGUCGCu -3'
miRNA:   3'- ccGGCGC-CA-GCGCC---AGCGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 29691 0.66 0.629598
Target:  5'- gGGCCGCgaagGGcUCGUccGUCuCGGGGUCGUa -3'
miRNA:   3'- -CCGGCG----CC-AGCGc-CAGcGCCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 926 0.66 0.629598
Target:  5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3'
miRNA:   3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 133654 0.66 0.629598
Target:  5'- cGCCGCgcuGGaCGCcGaCGCGGAGUuCGCc -3'
miRNA:   3'- cCGGCG---CCaGCGcCaGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 926 0.66 0.629598
Target:  5'- cGGCgGCGG-CGaGG-CgGCGGAG-CGCg -3'
miRNA:   3'- -CCGgCGCCaGCgCCaG-CGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 2128 0.67 0.62377
Target:  5'- uGGCaGCGGuucagcaccaccagcUCGCaGUUGCGGAGccugccgCGCa -3'
miRNA:   3'- -CCGgCGCC---------------AGCGcCAGCGCCUCa------GCG- -5'
25507 5' -62.1 NC_005337.1 + 8890 0.67 0.619886
Target:  5'- gGGCCGCGccacaggCGCGGcCGCGucuacaGAGUCu- -3'
miRNA:   3'- -CCGGCGCca-----GCGCCaGCGC------CUCAGcg -5'
25507 5' -62.1 NC_005337.1 + 36153 0.67 0.619886
Target:  5'- cGCCGCGGU-GCcuGGUCacgGUGGAccggcccacgucGUCGCa -3'
miRNA:   3'- cCGGCGCCAgCG--CCAG---CGCCU------------CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 90387 0.67 0.619886
Target:  5'- uGGCCGUGGUacgugUGCGcGUCGCGcacguUCGUg -3'
miRNA:   3'- -CCGGCGCCA-----GCGC-CAGCGCcuc--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 30759 0.67 0.610182
Target:  5'- gGGCgGCaGcgUGCGGaagCGCugcacGGAGUCGCa -3'
miRNA:   3'- -CCGgCGcCa-GCGCCa--GCG-----CCUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 59307 0.67 0.610182
Target:  5'- cGGCCGCuaUCGCGuaGcCGCGGAGccccaGCa -3'
miRNA:   3'- -CCGGCGccAGCGC--CaGCGCCUCag---CG- -5'
25507 5' -62.1 NC_005337.1 + 3792 0.67 0.610182
Target:  5'- cGCUGaaGUCGCGGuugaguacguacUCGCGGAGgagGCu -3'
miRNA:   3'- cCGGCgcCAGCGCC------------AGCGCCUCag-CG- -5'
25507 5' -62.1 NC_005337.1 + 105168 0.67 0.610182
Target:  5'- cGCUGCacGG-CGUGGucgaccccugcuUCGCGGGGUcCGCg -3'
miRNA:   3'- cCGGCG--CCaGCGCC------------AGCGCCUCA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 58353 0.67 0.610182
Target:  5'- -aCCGUGGcCGCGcucuUCGCGGAcuUCGCg -3'
miRNA:   3'- ccGGCGCCaGCGCc---AGCGCCUc-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.