miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 5' -62.1 NC_005337.1 + 31250 0.66 0.668396
Target:  5'- aGGUCGCGGcuccggcaGCGGaUGCGGuG-CGCc -3'
miRNA:   3'- -CCGGCGCCag------CGCCaGCGCCuCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 11329 0.66 0.668396
Target:  5'- uGGCgGCGucGUCGCGGcCGgGGAuggagaagaGcCGCg -3'
miRNA:   3'- -CCGgCGC--CAGCGCCaGCgCCU---------CaGCG- -5'
25507 5' -62.1 NC_005337.1 + 36283 0.66 0.668396
Target:  5'- cGCUGCGcgaaCGCGGcCaCGGuGUCGCg -3'
miRNA:   3'- cCGGCGCca--GCGCCaGcGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 117300 0.66 0.666463
Target:  5'- --aCGUGGUCGCGuacgcgaacacCGCGGGGaUCGCc -3'
miRNA:   3'- ccgGCGCCAGCGCca---------GCGCCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 68038 0.66 0.659687
Target:  5'- cGCCGaUGGggaCGCGGgacuccauuuacuacCGCGGAGgaaCGCa -3'
miRNA:   3'- cCGGC-GCCa--GCGCCa--------------GCGCCUCa--GCG- -5'
25507 5' -62.1 NC_005337.1 + 52128 0.66 0.658719
Target:  5'- cGGCCaUGGccuUCGUGGaCGCGu-GUCGCg -3'
miRNA:   3'- -CCGGcGCC---AGCGCCaGCGCcuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 4579 0.66 0.658719
Target:  5'- uGCCGCGGgCGCGGcgacugCGCgugcuggugcaGGAG-CGUg -3'
miRNA:   3'- cCGGCGCCaGCGCCa-----GCG-----------CCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 65422 0.66 0.658719
Target:  5'- cGGCgCGgGGcUgGUGGcgUCGCGGAGgagccagggCGCg -3'
miRNA:   3'- -CCG-GCgCC-AgCGCC--AGCGCCUCa--------GCG- -5'
25507 5' -62.1 NC_005337.1 + 95305 0.66 0.658719
Target:  5'- aGGCgCGCGGcgCGCuGUUGCGcucGUCGUc -3'
miRNA:   3'- -CCG-GCGCCa-GCGcCAGCGCcu-CAGCG- -5'
25507 5' -62.1 NC_005337.1 + 74171 0.66 0.658719
Target:  5'- uGCUGCGGgaggCGCGcUCGggccgGGAGUCGg -3'
miRNA:   3'- cCGGCGCCa---GCGCcAGCg----CCUCAGCg -5'
25507 5' -62.1 NC_005337.1 + 39191 0.66 0.65775
Target:  5'- aGGCCGUcGcCGCGGgcuaCGCGGAcccggacccgggcGUgCGCg -3'
miRNA:   3'- -CCGGCGcCaGCGCCa---GCGCCU-------------CA-GCG- -5'
25507 5' -62.1 NC_005337.1 + 72386 0.66 0.652902
Target:  5'- cGUCGCGGUCagcgagcccccgggGUGG-CGCGacgucgugcacuacGAGUCGCc -3'
miRNA:   3'- cCGGCGCCAG--------------CGCCaGCGC--------------CUCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 1336 0.66 0.649021
Target:  5'- aGGCCGCGG-CgGCGGUaguugaacucCGCGc--UCGCg -3'
miRNA:   3'- -CCGGCGCCaG-CGCCA----------GCGCcucAGCG- -5'
25507 5' -62.1 NC_005337.1 + 128220 0.66 0.649021
Target:  5'- cGCuCGUGGcCGCGGgCGCGGAcauccaCGCc -3'
miRNA:   3'- cCG-GCGCCaGCGCCaGCGCCUca----GCG- -5'
25507 5' -62.1 NC_005337.1 + 50374 0.66 0.649021
Target:  5'- gGGCC-CGGgcacgggCGCcuGG-CGCGGGGgCGCg -3'
miRNA:   3'- -CCGGcGCCa------GCG--CCaGCGCCUCaGCG- -5'
25507 5' -62.1 NC_005337.1 + 36102 0.66 0.649021
Target:  5'- cGCCGacgauggaGGUcaCGCGGUCGuCGGGGaaggcCGCc -3'
miRNA:   3'- cCGGCg-------CCA--GCGCCAGC-GCCUCa----GCG- -5'
25507 5' -62.1 NC_005337.1 + 132272 0.66 0.648051
Target:  5'- uGGCCGUGcugcUGCGGUCGUccgacgcgacgcuGGAGcUCGUc -3'
miRNA:   3'- -CCGGCGCca--GCGCCAGCG-------------CCUC-AGCG- -5'
25507 5' -62.1 NC_005337.1 + 121880 0.66 0.648051
Target:  5'- cGCUGCGGcuguugcUCGCGGcaaGCGaGGGaaUCGCg -3'
miRNA:   3'- cCGGCGCC-------AGCGCCag-CGC-CUC--AGCG- -5'
25507 5' -62.1 NC_005337.1 + 111428 0.66 0.639313
Target:  5'- cGCCGCGGUCcaGCacgaGCGG-GUCGUc -3'
miRNA:   3'- cCGGCGCCAG--CGccagCGCCuCAGCG- -5'
25507 5' -62.1 NC_005337.1 + 10519 0.66 0.639313
Target:  5'- cGGCCacguugcCGGUgGCGGa-GCGGAGcaCGCg -3'
miRNA:   3'- -CCGGc------GCCAgCGCCagCGCCUCa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.