miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 4755 0.66 0.768646
Target:  5'- --cGCGCCGcGCGCGaGCAG-CGCGuCg -3'
miRNA:   3'- ggaCGUGGU-CGUGCgCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 1323 0.66 0.777927
Target:  5'- -gUGCACguGCACGa--GGcCGCGGCg -3'
miRNA:   3'- ggACGUGguCGUGCgcgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 31059 0.66 0.796095
Target:  5'- --gGUugCAGCGgGCcauGCAGUUGcCGACa -3'
miRNA:   3'- ggaCGugGUCGUgCG---CGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 35437 0.66 0.768646
Target:  5'- --cGCGCaCGGCGCG-GUGGgCGCGACc -3'
miRNA:   3'- ggaCGUG-GUCGUGCgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 89959 0.66 0.768646
Target:  5'- --gGCGCggccgCAGCACGCGCucgGGggaGCGGCg -3'
miRNA:   3'- ggaCGUG-----GUCGUGCGCG---UCag-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 121554 0.66 0.772373
Target:  5'- uCCgGCACCuccucgagcgcggcGCGCGCGCGGaCGCcACc -3'
miRNA:   3'- -GGaCGUGGu-------------CGUGCGCGUCaGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 109446 0.66 0.768646
Target:  5'- --cGCGCCgcucgAGCACgGCGaggaAGUCGCGGa -3'
miRNA:   3'- ggaCGUGG-----UCGUG-CGCg---UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 47139 0.66 0.78708
Target:  5'- aCCaGUACCAGUACaucaCGguGUgcuucCGCGACa -3'
miRNA:   3'- -GGaCGUGGUCGUGc---GCguCA-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6874 0.66 0.78708
Target:  5'- -gUGCAgCAGCGUGCGCccguccauGUCGCGcGCg -3'
miRNA:   3'- ggACGUgGUCGUGCGCGu-------CAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 25719 0.66 0.78708
Target:  5'- gCC-GCGCCgccagcgucaGGCGCGCGCcccgcaccGUCGCGcCg -3'
miRNA:   3'- -GGaCGUGG----------UCGUGCGCGu-------CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 98490 0.66 0.781604
Target:  5'- --cGCGCCGGCggcguccgucaugacACGCGCcacgaucccGGUCGCGcCc -3'
miRNA:   3'- ggaCGUGGUCG---------------UGCGCG---------UCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 38296 0.66 0.768646
Target:  5'- --aGCACCGGUggagggGCGCGCGcGUCGagcgcaacgacCGACg -3'
miRNA:   3'- ggaCGUGGUCG------UGCGCGU-CAGC-----------GCUG- -5'
25508 3' -58.6 NC_005337.1 + 27114 0.66 0.777927
Target:  5'- uCCaGCAgCCgcuuGGcCACGCGCAGcagCGUGACc -3'
miRNA:   3'- -GGaCGU-GG----UC-GUGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 51907 0.66 0.777927
Target:  5'- --gGCcCuCGGCGcCGUGCAGUCgGCGGCc -3'
miRNA:   3'- ggaCGuG-GUCGU-GCGCGUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 73400 0.66 0.768646
Target:  5'- --cGCGCCcGCACcCGCAGcUCGUgGACg -3'
miRNA:   3'- ggaCGUGGuCGUGcGCGUC-AGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 6550 0.66 0.777005
Target:  5'- gUUGCGCCGGaagacuuccgcUACgGCGCagaacccGGUCGCGGCc -3'
miRNA:   3'- gGACGUGGUC-----------GUG-CGCG-------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29472 0.66 0.777927
Target:  5'- --aGCACCAGC-CGCGgGaaCGCGAg -3'
miRNA:   3'- ggaCGUGGUCGuGCGCgUcaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 120797 0.66 0.777927
Target:  5'- gCUGgAgCGGCGCGaGaCGGUCuGCGACg -3'
miRNA:   3'- gGACgUgGUCGUGCgC-GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2350 0.66 0.777927
Target:  5'- uCCgGgGCCAGCGCGCcGCAGcacCGguCGACc -3'
miRNA:   3'- -GGaCgUGGUCGUGCG-CGUCa--GC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 47607 0.66 0.749735
Target:  5'- --cGaCGCC-GCGCGCGCGGcCGCG-Cu -3'
miRNA:   3'- ggaC-GUGGuCGUGCGCGUCaGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.