miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 79400 0.66 0.796095
Target:  5'- gCUGCuCCA-CGCG-GCGG-CGCGGCa -3'
miRNA:   3'- gGACGuGGUcGUGCgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 19537 0.66 0.777927
Target:  5'- gCCggaGCccguCCAGCACGCGCcggacGUCGUaaacGGCg -3'
miRNA:   3'- -GGa--CGu---GGUCGUGCGCGu----CAGCG----CUG- -5'
25508 3' -58.6 NC_005337.1 + 98490 0.66 0.781604
Target:  5'- --cGCGCCGGCggcguccgucaugacACGCGCcacgaucccGGUCGCGcCc -3'
miRNA:   3'- ggaCGUGGUCG---------------UGCGCG---------UCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 15348 0.66 0.749735
Target:  5'- gCUGCGCCcGCGCGaCGCuuccaggCGCGcACu -3'
miRNA:   3'- gGACGUGGuCGUGC-GCGuca----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 25719 0.66 0.78708
Target:  5'- gCC-GCGCCgccagcgucaGGCGCGCGCcccgcaccGUCGCGcCg -3'
miRNA:   3'- -GGaCGUGG----------UCGUGCGCGu-------CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 36440 0.66 0.759246
Target:  5'- cCCgGCugCAGC-UGCGCGGgCG-GACg -3'
miRNA:   3'- -GGaCGugGUCGuGCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 47607 0.66 0.749735
Target:  5'- --cGaCGCC-GCGCGCGCGGcCGCG-Cu -3'
miRNA:   3'- ggaC-GUGGuCGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 133123 0.66 0.749735
Target:  5'- gCUcCGCCGGCGCGCuccccgcggaGCuGGUCGCGcGCg -3'
miRNA:   3'- gGAcGUGGUCGUGCG----------CG-UCAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 129244 0.66 0.796095
Target:  5'- gCUGCAUCuGUACGUGCucaaCGcCGACg -3'
miRNA:   3'- gGACGUGGuCGUGCGCGuca-GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 50362 0.66 0.7583
Target:  5'- gCCUGgGCCAGCAgGCGCcgcccccguacccGG-CG-GACa -3'
miRNA:   3'- -GGACgUGGUCGUgCGCG-------------UCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 19915 0.66 0.777927
Target:  5'- nCUGgACCAGguaggGCGUGUGGUaCGCGAUg -3'
miRNA:   3'- gGACgUGGUCg----UGCGCGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84002 0.66 0.768646
Target:  5'- gCCUGCACgGGgcacaCugGCGCuucUGCGGCg -3'
miRNA:   3'- -GGACGUGgUC-----GugCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131159 0.66 0.749735
Target:  5'- --cGCgagGCCGGcCGCGguCGCGGUCGCGGa -3'
miRNA:   3'- ggaCG---UGGUC-GUGC--GCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 129523 0.66 0.78708
Target:  5'- --cGCGCUgcuCGCGCGCGG-CGCGAg -3'
miRNA:   3'- ggaCGUGGuc-GUGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 120797 0.66 0.777927
Target:  5'- gCUGgAgCGGCGCGaGaCGGUCuGCGACg -3'
miRNA:   3'- gGACgUgGUCGUGCgC-GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52520 0.66 0.78708
Target:  5'- gCUGUACCGGCACG-GCA--UGCugGACg -3'
miRNA:   3'- gGACGUGGUCGUGCgCGUcaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 36878 0.66 0.749735
Target:  5'- --gGUugCAGUAgaugcgguuCGCGCGG-CGCGGCg -3'
miRNA:   3'- ggaCGugGUCGU---------GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 93780 0.66 0.749735
Target:  5'- uUCgauCGCCGG-ACGCGCuacgacguGGUCGCGGCu -3'
miRNA:   3'- -GGac-GUGGUCgUGCGCG--------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85847 0.66 0.777005
Target:  5'- --aGCGCCAGCACGUccgcguccgccauGuCGGgCGCGAUc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-------------C-GUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 47139 0.66 0.78708
Target:  5'- aCCaGUACCAGUACaucaCGguGUgcuucCGCGACa -3'
miRNA:   3'- -GGaCGUGGUCGUGc---GCguCA-----GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.